{ "type": "genome", "identifier": "GCF_003994475.1", "organism": "Paenibacillus anaericanus", "title": "Paenibacillus anaericanus", "description": "na", "data type": "Genome sequencing and assembly", "organization": "Anhui Agricultural University", "publication": [ {} ], "properties": { "assembly_accession": "GCF_003994475.1", "bioproject": "PRJNA224116", "biosample": "SAMN10579349", "wgs_master": "RZNY00000000.1", "refseq_category": "reference genome", "taxid": "170367", "species_taxid": "170367", "organism_name": "Paenibacillus anaericanus", "infraspecific_name": "strain=DSM 15890", "isolate": "na", "version_status": "latest", "assembly_level": "Scaffold", "release_type": "Major", "genome_rep": "Full", "seq_rel_date": "2019/01/05", "asm_name": "ASM399447v1", "asm_submitter": "Anhui Agricultural University", "gbrs_paired_asm": "GCA_003994475.1", "paired_asm_comp": "identical", "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/003/994/475/GCF_003994475.1_ASM399447v1", "excluded_from_refseq": "na", "relation_to_type_material": "assembly from type material", "asm_not_live_date": "na ", "assembly_type": "haploid", "group": "bacteria", "genome_size": "6069163", "genome_size_ungapped": "6069147", "gc_percent": "42.000000", "replicon_count": "0", "scaffold_count": "93", "contig_count": "93", "annotation_provider": "NCBI RefSeq", "annotation_name": "GCF_003994475.1-RS_2024_05_04", "annotation_date": "2024-05-04", "total_gene_count": "5582", "protein_coding_gene_count": "5448", "non_coding_gene_count": "65", "pubmed_id": "na" }, "dbXrefs": [], "distribution": null, "Download": null, "status": "public", "visibility": null, "dateCreated": "2019-01-05", "dateModified": "2019-01-05", "datePublished": "2019-01-05", "_annotation": { "sample_count": 1, "sample_organism": [ "Paenibacillus anaericanus" ], "sample_taxid": [ "170367" ], "sample_host_organism": [ "Aporrectodea caliginosa" ], "sample_host_organism_id": [], "sample_host_disease": [], "sample_host_disease_id": [], "sample_host_location": [ "not applicable" ], "sample_host_location_id": [], "data_size": "1.739 MB", "sample_ph_range": { "min": null, "max": null }, "sample_temperature_range": { "min": null, "max": null }, "completeness": 100.0, "contamination": 0.0, "strain_heterogeneity": 0.0, "genome_count": 1 }, "data_type": "G", "data_source": "RefSeq", "_dfast": { "Total Sequence Length (bp)": "6069163", "Number of Sequences": "93", "Longest Sequences (bp)": "442937", "N50 (bp)": "190404", "Gap Ratio (%)": "0.001104", "GCcontent (%)": "42.1", "Number of CDSs": "5590", "Average Protein Length": "312.6", "Coding Ratio (%)": "86.4", "Number of rRNAs": "3", "Number of tRNAs": "56", "Number of CRISPRs": "2" }, "has_analysis": true, "_dfastqc": { "tc_result": [ { "organism_name": "Paenibacillus anaericanus", "strain": "strain=DSM 15890", "accession": "GCA_003994475.1", "taxid": 170367, "species_taxid": 170367, "relation_to_type": "type", "validated": true, "ani": 100.0, 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"ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Paenibacillus ihumii", "strain": "strain=AT5", "accession": "GCA_001403875.1", "taxid": 687436, "species_taxid": 687436, "relation_to_type": "type", "validated": true, "ani": 77.7257, "matched_fragments": 224, "total_fragments": 1980, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Paenibacillus aceti", "strain": "strain=L14", "accession": "GCA_003614185.1", "taxid": 1820010, "species_taxid": 1820010, "relation_to_type": "type", "validated": true, "ani": 77.6418, "matched_fragments": 215, "total_fragments": 1980, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Paenibacillus aceti", "strain": "strain=CGMCC 1.15420", "accession": "GCA_014642755.1", "taxid": 1820010, "species_taxid": 1820010, "relation_to_type": "type", "validated": true, "ani": 77.5924, "matched_fragments": 210, "total_fragments": 1980, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Paenibacillus yonginensis", "strain": "strain=DCY84", "accession": "GCA_001685395.1", "taxid": 1462996, "species_taxid": 1462996, "relation_to_type": "type", "validated": true, "ani": 77.5073, "matched_fragments": 113, "total_fragments": 1980, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Paenibacillus turicensis", "strain": "strain=DSM 14349", "accession": "GCA_017873435.1", "taxid": 160487, "species_taxid": 160487, "relation_to_type": "type", "validated": true, "ani": 77.488, "matched_fragments": 168, "total_fragments": 1980, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Paenibacillus fonticola", "strain": "strain=DSM 21315", "accession": "GCA_000381905.1", "taxid": 379896, "species_taxid": 379896, "relation_to_type": "type", "validated": true, "ani": 77.3959, "matched_fragments": 253, "total_fragments": 1980, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Paenibacillus brevis", "strain": 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"vibrio_cell_shape": 0.0, "spiral_cell_shape": 0.0 }, "_genome_taxon": [ "Paenibacillus", "anaericanus" ], "quality": 4, "quality_label": "\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f" }