{ "type": "genome", "identifier": "GCF_004000255.1", "organism": "Nioella ostreopsis", "title": "Nioella ostreopsis", "description": "na", "data type": "Genome sequencing and assembly", "organization": "Zhejiang Ocean University", "publication": [ {} ], "properties": { "assembly_accession": "GCF_004000255.1", "bioproject": "PRJNA224116", "biosample": "SAMN10170243", "wgs_master": "RCIQ00000000.1", "refseq_category": "reference genome", "taxid": "2448479", "species_taxid": "2448479", "organism_name": "Nioella ostreopsis", "infraspecific_name": "strain=Z7-4", "isolate": "na", "version_status": "latest", "assembly_level": "Scaffold", "release_type": "Major", "genome_rep": "Full", "seq_rel_date": "2019/01/08", "asm_name": "ASM400025v1", "asm_submitter": "Zhejiang Ocean University", "gbrs_paired_asm": "GCA_004000255.1", "paired_asm_comp": "identical", "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/004/000/255/GCF_004000255.1_ASM400025v1", "excluded_from_refseq": "na", "relation_to_type_material": "assembly from type material", "asm_not_live_date": "na ", "assembly_type": "haploid", "group": "bacteria", "genome_size": "4635959", "genome_size_ungapped": "4635947", "gc_percent": "63.000000", "replicon_count": "0", "scaffold_count": "101", "contig_count": "101", "annotation_provider": "NCBI RefSeq", "annotation_name": "GCF_004000255.1-RS_2024_03_28", "annotation_date": "2024-03-28", "total_gene_count": "4640", "protein_coding_gene_count": "4518", "non_coding_gene_count": "51", "pubmed_id": "na" }, "dbXrefs": [], "distribution": null, "Download": null, "status": "public", "visibility": null, "dateCreated": "2019-01-08", "dateModified": "2019-01-08", "datePublished": "2019-01-08", "_annotation": { "sample_count": 1, "sample_organism": [ "Nioella ostreopsis" ], "sample_taxid": [ "2448479" ], "sample_host_organism": [ "Alexandrium minutum (dinoflagellate)" ], "sample_host_organism_id": [], "sample_host_disease": [], "sample_host_disease_id": [], "sample_host_location": [ "Taiwan: Pingtung Prefecture, Tungkang" ], "sample_host_location_id": [], "data_size": "1.294 MB", "sample_ph_range": { "min": null, "max": null }, "sample_temperature_range": { "min": null, "max": null }, "completeness": 100.0, "contamination": 0.0, "strain_heterogeneity": 0.0, "genome_count": 1 }, "data_type": "G", "data_source": "RefSeq", "_dfast": { "Total Sequence Length (bp)": "4635959", "Number of Sequences": "101", "Longest Sequences (bp)": "502060", "N50 (bp)": "159074", "Gap Ratio (%)": "0.000971", "GCcontent (%)": "63.0", "Number of CDSs": "4545", "Average Protein Length": "302.7", "Coding Ratio (%)": "89.0", "Number of rRNAs": "3", "Number of tRNAs": "47", "Number of CRISPRs": "0" }, "has_analysis": true, "_dfastqc": { "tc_result": [ { "organism_name": "Nioella ostreopsis", "strain": "strain=Z7-4", "accession": "GCA_004000255.1", "taxid": 2448479, "species_taxid": 2448479, "relation_to_type": "type", "validated": true, "ani": 100.0, 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