{ "type": "genome", "identifier": "GCF_004000435.1", "organism": "Alexandriicola marinus", "title": "Alexandriicola marinus", "description": "na", "data type": "Genome sequencing and assembly", "organization": "Zhejiang Ocean University", "publication": [ {} ], "properties": { "assembly_accession": "GCF_004000435.1", "bioproject": "PRJNA224116", "biosample": "SAMN10170244", "wgs_master": "RBVZ00000000.1", "refseq_category": "reference genome", "taxid": "2081710", "species_taxid": "2081710", "organism_name": "Alexandriicola marinus", "infraspecific_name": "strain=LZ-14", "isolate": "na", "version_status": "latest", "assembly_level": "Contig", "release_type": "Major", "genome_rep": "Full", "seq_rel_date": "2019/01/08", "asm_name": "ASM400043v1", "asm_submitter": "Zhejiang Ocean University", "gbrs_paired_asm": "GCA_004000435.1", "paired_asm_comp": "identical", "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/004/000/435/GCF_004000435.1_ASM400043v1", "excluded_from_refseq": "na", "relation_to_type_material": "assembly from type material", "asm_not_live_date": "na ", "assembly_type": "haploid", "group": "bacteria", "genome_size": "4615538", "genome_size_ungapped": "4615538", "gc_percent": "63.500000", "replicon_count": "0", "scaffold_count": "111", "contig_count": "111", "annotation_provider": "NCBI RefSeq", "annotation_name": "GCF_004000435.1-RS_2024_03_28", "annotation_date": "2024-03-28", "total_gene_count": "4610", "protein_coding_gene_count": "4476", "non_coding_gene_count": "46", "pubmed_id": "na" }, "dbXrefs": [], "distribution": null, "Download": null, "status": "public", "visibility": null, "dateCreated": "2019-01-08", "dateModified": "2019-01-08", "datePublished": "2019-01-08", "_annotation": { "sample_count": 1, "sample_organism": [ "Alexandriicola marinus" ], "sample_taxid": [ "2081710" ], "sample_host_organism": [ "Alexandrium minutum" ], "sample_host_organism_id": [], "sample_host_disease": [], "sample_host_disease_id": [], "sample_host_location": [ "Taiwan: Pingtung Prefecture, Tungkang" ], "sample_host_location_id": [], "data_size": "1.282 MB", "sample_ph_range": { "min": null, "max": null }, "sample_temperature_range": { "min": null, "max": null }, "completeness": 100.0, "contamination": 0.0, "strain_heterogeneity": 0.0, "genome_count": 1 }, "data_type": "G", "data_source": "RefSeq", "_dfast": { "Total Sequence Length (bp)": "4615538", "Number of Sequences": "111", "Longest Sequences (bp)": "1319033", "N50 (bp)": "1271123", "Gap Ratio (%)": "0.000758", "GCcontent (%)": "63.3", "Number of CDSs": "4516", "Average Protein Length": "307.0", "Coding Ratio (%)": "90.1", "Number of rRNAs": "3", "Number of tRNAs": "45", "Number of CRISPRs": "0" }, "has_analysis": true, "_dfastqc": { "tc_result": [ { "organism_name": "Alexandriicola marinus", "strain": "strain=LZ-14", "accession": "GCA_004000435.1", "taxid": 2081710, "species_taxid": 2081710, "relation_to_type": "type", "validated": true, "ani": 100.0, "matched_fragments": 1498, "total_fragments": 1503, "ani_threshold": 95, "status": "conclusive" }, { "organism_name": "Marivivens aquimaris", "strain": "strain=GSB7", "accession": "GCA_015220045.1", "taxid": 2774876, "species_taxid": 2774876, "relation_to_type": "type", "validated": true, "ani": 78.872, "matched_fragments": 264, "total_fragments": 1503, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Limimaricola hongkongensis", "strain": "strain=DSM 17492", "accession": "GCA_000600975.2", "taxid": 278132, "species_taxid": 278132, "relation_to_type": "type", "validated": true, "ani": 78.6167, "matched_fragments": 393, "total_fragments": 1503, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Limimaricola hongkongensis", "strain": "strain=UST950701-009P", "accession": "GCA_000365005.1", "taxid": 278132, "species_taxid": 278132, "relation_to_type": "type", "validated": true, "ani": 78.4789, "matched_fragments": 391, "total_fragments": 1503, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Roseovarius indicus", "strain": "strain=DSM 26383", "accession": "GCA_008728195.1", "taxid": 540747, "species_taxid": 540747, "relation_to_type": "type", "validated": true, "ani": 78.385, "matched_fragments": 401, "total_fragments": 1503, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Roseovarius indicus", "strain": "strain=DSM 26383", "accession": "GCA_900112725.1", "taxid": 540747, "species_taxid": 540747, "relation_to_type": "type", "validated": true, "ani": 78.3626, "matched_fragments": 394, "total_fragments": 1503, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Wenxinia saemankumensis", "strain": "strain=DSM 100565", "accession": "GCA_900141735.1", "taxid": 1447782, "species_taxid": 1447782, "relation_to_type": "type", "validated": true, "ani": 78.2815, "matched_fragments": 426, "total_fragments": 1503, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Roseovarius indicus", "strain": "strain=B108", "accession": "GCA_001441635.1", "taxid": 540747, "species_taxid": 540747, "relation_to_type": "type", "validated": true, "ani": 78.2678, "matched_fragments": 400, "total_fragments": 1503, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Limimaricola soesokkakensis", "strain": "strain=DSM 29956", "accession": "GCA_003014435.1", "taxid": 1343159, "species_taxid": 1343159, "relation_to_type": "type", "validated": true, "ani": 78.2394, "matched_fragments": 368, "total_fragments": 1503, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Antarcticimicrobium luteum", "strain": "strain=318-1", "accession": "GCA_004358185.1", "taxid": 2547397, "species_taxid": 2547397, "relation_to_type": "type", "validated": true, "ani": 78.1664, "matched_fragments": 412, "total_fragments": 1503, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Ruegeria marisrubri", "strain": "strain=ZGT118", "accession": "GCA_001507595.1", "taxid": 1685379, "species_taxid": 1685379, "relation_to_type": "type", "validated": true, "ani": 78.1061, "matched_fragments": 347, "total_fragments": 1503, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Limimaricola pyoseonensis", "strain": "strain=DSM 21424", "accession": "GCA_900102015.1", "taxid": 521013, "species_taxid": 521013, "relation_to_type": "type", "validated": true, "ani": 78.0684, "matched_fragments": 437, "total_fragments": 1503, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Ruegeria intermedia", "strain": "strain=DSM 29341", "accession": "GCA_900129345.1", "taxid": 996115, "species_taxid": 996115, "relation_to_type": "type", "validated": true, "ani": 78.0668, "matched_fragments": 380, "total_fragments": 1503, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Ruegeria pomeroyi", "strain": "strain=DSS-3", "accession": "GCA_000011965.2", "taxid": 89184, "species_taxid": 89184, "relation_to_type": "suspected-type", "validated": true, "ani": 78.0362, "matched_fragments": 399, "total_fragments": 1503, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Marivita lacus", "strain": "strain=CGMCC 1.12478", "accession": "GCA_014637725.1", "taxid": 1323742, "species_taxid": 1323742, "relation_to_type": "type", "validated": true, "ani": 77.9888, "matched_fragments": 413, "total_fragments": 1503, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Wenxinia marina", "strain": "strain=DSM 24838", "accession": "GCA_000379485.1", "taxid": 390641, "species_taxid": 390641, "relation_to_type": "type", "validated": true, "ani": 77.9787, "matched_fragments": 411, "total_fragments": 1503, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Roseibacterium elongatum", "strain": "strain=DFL-43", "accession": "GCA_000590925.1", "taxid": 159346, "species_taxid": 159346, "relation_to_type": "type", "validated": true, "ani": 77.9675, "matched_fragments": 379, "total_fragments": 1503, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Wenxinia marina", "strain": "strain=DSM 24838", "accession": "GCA_000836695.1", "taxid": 390641, "species_taxid": 390641, "relation_to_type": "type", "validated": true, "ani": 77.9552, "matched_fragments": 422, "total_fragments": 1503, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Palleronia sediminis", "strain": "strain=SS33", "accession": "GCA_004358695.1", "taxid": 2547833, "species_taxid": 2547833, "relation_to_type": "type", "validated": true, "ani": 77.95, "matched_fragments": 353, "total_fragments": 1503, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Loktanella atrilutea", "strain": "strain=DSM 29326", "accession": "GCA_900128995.1", "taxid": 366533, "species_taxid": 366533, "relation_to_type": "type", "validated": true, "ani": 77.9053, "matched_fragments": 357, "total_fragments": 1503, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Wenxinia marina", "strain": "strain=CGMCC 1.6105", "accession": "GCA_014645075.1", "taxid": 390641, "species_taxid": 390641, "relation_to_type": "type", "validated": true, "ani": 77.8972, "matched_fragments": 431, "total_fragments": 1503, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Pseudooceanicola antarcticus", "strain": "strain=Ar-45", "accession": "GCA_002786285.1", "taxid": 1247613, "species_taxid": 1247613, "relation_to_type": "type", "validated": true, "ani": 77.7742, "matched_fragments": 339, "total_fragments": 1503, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Pseudoroseicyclus aestuarii", "strain": "strain=CECT 9025", "accession": "GCA_003217255.1", "taxid": 1795041, "species_taxid": 1795041, "relation_to_type": "type", "validated": true, "ani": 77.7678, "matched_fragments": 353, "total_fragments": 1503, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Rhodovulum tesquicola", "strain": "strain=A-36s", "accession": "GCA_024128855.1", "taxid": 540254, "species_taxid": 540254, "relation_to_type": "type", "validated": true, "ani": 77.6989, "matched_fragments": 380, "total_fragments": 1503, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Pseudooceanicola antarcticus", "strain": "strain=CGMCC 1.12662", "accession": "GCA_900215355.1", "taxid": 1247613, "species_taxid": 1247613, "relation_to_type": "type", "validated": true, "ani": 77.6322, "matched_fragments": 346, "total_fragments": 1503, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Sagittula marina", "strain": "strain=DSM 102235", "accession": "GCA_014196795.1", "taxid": 943940, "species_taxid": 943940, "relation_to_type": "type", "validated": true, "ani": 77.3431, "matched_fragments": 234, "total_fragments": 1503, "ani_threshold": 95, "status": "below_threshold" } ], "cc_result": { "completeness": 100.0, "contamination": 0.0, "strain_heterogeneity": 0.0 }, "gtdb_result": [ { "accession": "GCF_004000435.1", "gtdb_species": "s__Flavimaricola sp004000435", "ani": 100.0, "matched_fragments": 1498, "total_fragments": 1503, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Alphaproteobacteria;o__Rhodobacterales;f__Rhodobacteraceae;g__Flavimaricola", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "99.99", "min_intra_species_ani": "99.97", "mean_intra_species_af": "0.99", "min_intra_species_af": "0.98", "num_clustered_genomes": 36, "status": "conclusive" }, { "accession": "GCF_002814095.1", "gtdb_species": "s__Sagittula sp002814095", "ani": 79.0098, "matched_fragments": 408, "total_fragments": 1503, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Alphaproteobacteria;o__Rhodobacterales;f__Rhodobacteraceae;g__Sagittula", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCF_000600975.2", "gtdb_species": "s__Limimaricola hongkongensis", "ani": 78.6165, "matched_fragments": 393, "total_fragments": 1503, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Alphaproteobacteria;o__Rhodobacterales;f__Rhodobacteraceae;g__Limimaricola", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "99.99", "min_intra_species_ani": "99.99", "mean_intra_species_af": "1.00", "min_intra_species_af": "1.00", "num_clustered_genomes": 2, "status": "-" }, { "accession": "GCF_900184895.1", "gtdb_species": "s__Flavimaricola marinus", "ani": 78.5334, "matched_fragments": 505, "total_fragments": 1503, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Alphaproteobacteria;o__Rhodobacterales;f__Rhodobacteraceae;g__Flavimaricola", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCF_900172355.1", "gtdb_species": "s__Oceanicola antarcticus", "ani": 78.4076, "matched_fragments": 498, "total_fragments": 1503, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Alphaproteobacteria;o__Rhodobacterales;f__Rhodobacteraceae;g__Oceanicola", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCA_003511785.1", "gtdb_species": "s__UBA7951 sp003511785", "ani": 78.3736, "matched_fragments": 277, "total_fragments": 1503, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Alphaproteobacteria;o__Rhodobacterales;f__Rhodobacteraceae;g__UBA7951", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCF_001975705.1", "gtdb_species": "s__Salipiger abyssi", "ani": 78.2957, "matched_fragments": 396, "total_fragments": 1503, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Alphaproteobacteria;o__Rhodobacterales;f__Rhodobacteraceae;g__Salipiger", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCF_900141735.1", "gtdb_species": "s__Wenxinia saemankumensis", "ani": 78.2756, "matched_fragments": 426, "total_fragments": 1503, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Alphaproteobacteria;o__Rhodobacterales;f__Rhodobacteraceae;g__Wenxinia", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCA_009993005.1", 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"s__JAGSOU01 sp018139985", "ani": 78.1356, "matched_fragments": 380, "total_fragments": 1503, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Alphaproteobacteria;o__Rhodobacterales;f__Rhodobacteraceae;g__JAGSOU01", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCF_001507595.1", "gtdb_species": "s__Ruegeria marisrubri", "ani": 78.0923, "matched_fragments": 349, "total_fragments": 1503, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Alphaproteobacteria;o__Rhodobacterales;f__Rhodobacteraceae;g__Ruegeria", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCF_900102015.1", "gtdb_species": "s__Limimaricola pyoseonensis", "ani": 78.0769, "matched_fragments": 436, "total_fragments": 1503, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Alphaproteobacteria;o__Rhodobacterales;f__Rhodobacteraceae;g__Limimaricola", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCF_003667315.2", "gtdb_species": "s__Tropicibacter sp003667315", "ani": 78.0593, "matched_fragments": 411, "total_fragments": 1503, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Alphaproteobacteria;o__Rhodobacterales;f__Rhodobacteraceae;g__Tropicibacter", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCA_009920775.1", "gtdb_species": "s__Marivivens sp009920775", "ani": 78.0539, "matched_fragments": 253, "total_fragments": 1503, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Alphaproteobacteria;o__Rhodobacterales;f__Rhodobacteraceae;g__Marivivens", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCF_000011965.2", "gtdb_species": "s__Ruegeria_B pomeroyi", "ani": 78.0511, "matched_fragments": 396, "total_fragments": 1503, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Alphaproteobacteria;o__Rhodobacterales;f__Rhodobacteraceae;g__Ruegeria_B", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "99.97", "min_intra_species_ani": "99.92", "mean_intra_species_af": "0.99", "min_intra_species_af": "0.98", "num_clustered_genomes": 5, "status": "-" }, { "accession": "GCF_014637725.1", "gtdb_species": "s__Marivita lacus", "ani": 77.9973, "matched_fragments": 412, "total_fragments": 1503, "gtdb_taxonomy": 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