{ "type": "genome", "identifier": "GCF_004000765.1", "organism": "Paenibacillus chondroitinus NBRC 15376", "title": "Paenibacillus chondroitinus NBRC 15376", "description": "na", "data type": "Genome sequencing and assembly", "organization": "National Institute of Technology and Evaluation", "publication": [ {} ], "properties": { "assembly_accession": "GCF_004000765.1", "bioproject": "PRJNA224116", "biosample": "SAMD00034160", "wgs_master": "BILW00000000.1", "refseq_category": "reference genome", "taxid": "1220560", "species_taxid": "59842", "organism_name": "Paenibacillus chondroitinus NBRC 15376", "infraspecific_name": "strain=NBRC 15376", "isolate": "na", "version_status": "latest", "assembly_level": "Contig", "release_type": "Major", "genome_rep": "Full", "seq_rel_date": "2018/12/29", "asm_name": "ASM400076v1", "asm_submitter": "National Institute of Technology and Evaluation", "gbrs_paired_asm": "GCA_004000765.1", "paired_asm_comp": "identical", "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/004/000/765/GCF_004000765.1_ASM400076v1", "excluded_from_refseq": "na", "relation_to_type_material": "assembly from type material", "asm_not_live_date": "na ", "assembly_type": "haploid", "group": "bacteria", "genome_size": "7884870", "genome_size_ungapped": "7884870", "gc_percent": "46.000000", "replicon_count": "0", "scaffold_count": "110", "contig_count": "110", "annotation_provider": "NCBI RefSeq", "annotation_name": "GCF_004000765.1-RS_2024_12_09", "annotation_date": "2024-12-09", "total_gene_count": "7194", "protein_coding_gene_count": "7068", "non_coding_gene_count": "39", "pubmed_id": "na" }, "dbXrefs": [], "distribution": null, "Download": null, "status": "public", "visibility": null, "dateCreated": "2018-12-29", "dateModified": "2018-12-29", "datePublished": "2018-12-29", "_annotation": { "sample_count": 1, "sample_organism": [ "Paenibacillus chondroitinus NBRC 15376" ], "sample_taxid": [ "1220560" ], "sample_host_organism": [], "sample_host_organism_id": [], "sample_host_disease": [], "sample_host_disease_id": [], "sample_host_location": [ "USA" ], "sample_host_location_id": [], "data_size": "2.262 MB", "sample_ph_range": { "min": null, "max": null }, "sample_temperature_range": { "min": null, "max": null }, "completeness": 100.0, "contamination": 4.17, "strain_heterogeneity": 0.0, "genome_count": 1 }, "data_type": "G", "data_source": "RefSeq", "_dfast": { "Total Sequence Length (bp)": "7884761", "Number of Sequences": "109", "Longest Sequences (bp)": "623530", "N50 (bp)": "171489", "Gap Ratio (%)": "0.000000", "GCcontent (%)": "46.2", "Number of CDSs": "7211", "Average Protein Length": "319.8", "Coding Ratio (%)": "87.7", "Number of rRNAs": "0", "Number of tRNAs": "35", "Number of CRISPRs": "0" }, "has_analysis": true, "_dfastqc": { "tc_result": [ { "organism_name": "Paenibacillus chondroitinus", "strain": "strain=NBRC 15376", "accession": "GCA_004000765.1", "taxid": 59842, "species_taxid": 59842, 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}, { "organism_name": "Paenibacillus lignilyticus", "strain": "strain=DLE-14", "accession": "GCA_017942085.1", "taxid": 1172615, "species_taxid": 1172615, "relation_to_type": "type", "validated": true, "ani": 76.475, "matched_fragments": 117, "total_fragments": 2577, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Paenibacillus algorifonticola", "strain": "strain=CGMCC 1.10223", "accession": "GCA_900112925.1", "taxid": 684063, "species_taxid": 684063, "relation_to_type": "type", "validated": true, "ani": 76.3265, "matched_fragments": 112, "total_fragments": 2577, "ani_threshold": 95, "status": "below_threshold" } ], "cc_result": { "completeness": 100.0, "contamination": 4.17, "strain_heterogeneity": 0.0 }, "gtdb_result": [ { "accession": "GCF_004000765.1", "gtdb_species": "s__Paenibacillus_E chondroitinus", "ani": 100.0, "matched_fragments": 2572, "total_fragments": 2577, "gtdb_taxonomy": 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