{
    "type": "genome",
    "identifier": "GCF_004000785.1",
    "organism": "Paenibacillus ehimensis NBRC 15659",
    "title": "Paenibacillus ehimensis NBRC 15659",
    "description": "na",
    "data type": "Genome sequencing and assembly",
    "organization": "National Institute of Technology and Evaluation",
    "publication": [
        {}
    ],
    "properties": {
        "assembly_accession": "GCF_004000785.1",
        "bioproject": "PRJNA224116",
        "biosample": "SAMD00034161",
        "wgs_master": "BILX00000000.1",
        "refseq_category": "reference genome",
        "taxid": "1220562",
        "species_taxid": "79264",
        "organism_name": "Paenibacillus ehimensis NBRC 15659",
        "infraspecific_name": "strain=NBRC 15659",
        "isolate": "na",
        "version_status": "latest",
        "assembly_level": "Contig",
        "release_type": "Major",
        "genome_rep": "Full",
        "seq_rel_date": "2018/12/29",
        "asm_name": "ASM400078v1",
        "asm_submitter": "National Institute of Technology and Evaluation",
        "gbrs_paired_asm": "GCA_004000785.1",
        "paired_asm_comp": "identical",
        "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/004/000/785/GCF_004000785.1_ASM400078v1",
        "excluded_from_refseq": "na",
        "relation_to_type_material": "assembly from type material",
        "asm_not_live_date": "na        ",
        "assembly_type": "haploid",
        "group": "bacteria",
        "genome_size": "7486149",
        "genome_size_ungapped": "7486149",
        "gc_percent": "54.000000",
        "replicon_count": "0",
        "scaffold_count": "215",
        "contig_count": "215",
        "annotation_provider": "NCBI RefSeq",
        "annotation_name": "GCF_004000785.1-RS_2024_12_16",
        "annotation_date": "2024-12-16",
        "total_gene_count": "7007",
        "protein_coding_gene_count": "6817",
        "non_coding_gene_count": "53",
        "pubmed_id": "na"
    },
    "dbXrefs": [],
    "distribution": null,
    "Download": null,
    "status": "public",
    "visibility": null,
    "dateCreated": "2018-12-29",
    "dateModified": "2018-12-29",
    "datePublished": "2018-12-29",
    "_annotation": {
        "sample_count": 1,
        "sample_organism": [
            "Paenibacillus ehimensis NBRC 15659"
        ],
        "sample_taxid": [
            "1220562"
        ],
        "sample_host_organism": [],
        "sample_host_organism_id": [],
        "sample_host_disease": [],
        "sample_host_disease_id": [],
        "sample_host_location": [
            "Japan:Ehime, Matsuyama"
        ],
        "sample_host_location_id": [],
        "data_size": "2.131 MB",
        "sample_ph_range": {
            "min": null,
            "max": null
        },
        "sample_temperature_range": {
            "min": null,
            "max": null
        },
        "completeness": 100.0,
        "contamination": 4.17,
        "strain_heterogeneity": 0.0,
        "genome_count": 1
    },
    "data_type": "G",
    "data_source": "RefSeq",
    "_dfast": {
        "Total Sequence Length (bp)": "7486149",
        "Number of Sequences": "215",
        "Longest Sequences (bp)": "260719",
        "N50 (bp)": "84323",
        "Gap Ratio (%)": "0.000000",
        "GCcontent (%)": "54.2",
        "Number of CDSs": "6848",
        "Average Protein Length": "309.4",
        "Coding Ratio (%)": "84.9",
        "Number of rRNAs": "0",
        "Number of tRNAs": "49",
        "Number of CRISPRs": "6"
    },
    "has_analysis": true,
    "_dfastqc": {
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                "organism_name": "Paenibacillus ehimensis",
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                "relation_to_type": "type",
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            {
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                "species_taxid": 1501230,
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                "ani": 91.0238,
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                "ani_threshold": 95,
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            },
            {
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                "ani_threshold": 95,
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            {
                "organism_name": "Paenibacillus validus",
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                "species_taxid": 44253,
                "relation_to_type": "type",
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                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Paenibacillus allorhizosphaerae",
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            },
            {
                "organism_name": "Paenibacillus flagellatus",
                "strain": "strain=DXL2",
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                "relation_to_type": "type",
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                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Paenibacillus macerans",
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                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Paenibacillus ginsengihumi",
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                "taxid": 431596,
                "species_taxid": 431596,
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                "ani": 77.9394,
                "matched_fragments": 434,
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                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Paenibacillus doosanensis",
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                "ani_threshold": 95,
                "status": "below_threshold"
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            {
                "organism_name": "Paenibacillus darwinianus",
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                "status": "below_threshold"
            },
            {
                "organism_name": "Paenibacillus artemisiicola",
                "strain": "strain=MWE-103",
                "accession": "GCA_017652985.1",
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                "relation_to_type": "type",
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                "ani": 76.9556,
                "matched_fragments": 230,
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                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Paenibacillus periandrae",
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            }
        ],
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                "accession": "GCF_004000785.1",
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        ]
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    "_bac2feature": {
        "phenotypes": null,
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    "_genome_taxon": [
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        "NBRC",
        "15659"
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    "quality_label": "\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f"
}