{
    "type": "genome",
    "identifier": "GCF_004000885.1",
    "organism": "Paenibacillus glucanolyticus NBRC 15330",
    "title": "Paenibacillus glucanolyticus NBRC 15330",
    "description": "na",
    "data type": "Genome sequencing and assembly",
    "organization": "National Institute of Technology and Evaluation",
    "publication": [
        {}
    ],
    "properties": {
        "assembly_accession": "GCF_004000885.1",
        "bioproject": "PRJNA224116",
        "biosample": "SAMD00034163",
        "wgs_master": "BIMC00000000.1",
        "refseq_category": "na",
        "taxid": "1349777",
        "species_taxid": "59843",
        "organism_name": "Paenibacillus glucanolyticus NBRC 15330",
        "infraspecific_name": "strain=NBRC 15330",
        "isolate": "na",
        "version_status": "latest",
        "assembly_level": "Contig",
        "release_type": "Major",
        "genome_rep": "Full",
        "seq_rel_date": "2018/12/29",
        "asm_name": "ASM400088v1",
        "asm_submitter": "National Institute of Technology and Evaluation",
        "gbrs_paired_asm": "GCA_004000885.1",
        "paired_asm_comp": "identical",
        "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/004/000/885/GCF_004000885.1_ASM400088v1",
        "excluded_from_refseq": "na",
        "relation_to_type_material": "assembly from type material",
        "asm_not_live_date": "na        ",
        "assembly_type": "haploid",
        "group": "bacteria",
        "genome_size": "6150324",
        "genome_size_ungapped": "6150324",
        "gc_percent": "48.500000",
        "replicon_count": "0",
        "scaffold_count": "50",
        "contig_count": "50",
        "annotation_provider": "NCBI RefSeq",
        "annotation_name": "GCF_004000885.1-RS_2024_12_23",
        "annotation_date": "2024-12-23",
        "total_gene_count": "5690",
        "protein_coding_gene_count": "5566",
        "non_coding_gene_count": "57",
        "pubmed_id": "na"
    },
    "dbXrefs": [],
    "distribution": null,
    "Download": null,
    "status": "public",
    "visibility": null,
    "dateCreated": "2018-12-29",
    "dateModified": "2018-12-29",
    "datePublished": "2018-12-29",
    "_annotation": {
        "sample_count": 1,
        "sample_organism": [
            "Paenibacillus glucanolyticus NBRC 15330"
        ],
        "sample_taxid": [
            "1349777"
        ],
        "sample_host_organism": [],
        "sample_host_organism_id": [],
        "sample_host_disease": [],
        "sample_host_disease_id": [],
        "sample_host_location": [
            "United Kingdom"
        ],
        "sample_host_location_id": [],
        "data_size": "1.759 MB",
        "sample_ph_range": {
            "min": null,
            "max": null
        },
        "sample_temperature_range": {
            "min": null,
            "max": null
        },
        "completeness": 100.0,
        "contamination": 0.0,
        "strain_heterogeneity": 0.0,
        "genome_count": 1
    },
    "data_type": "G",
    "data_source": "RefSeq",
    "_dfast": {
        "Total Sequence Length (bp)": "6150220",
        "Number of Sequences": "49",
        "Longest Sequences (bp)": "859330",
        "N50 (bp)": "223146",
        "Gap Ratio (%)": "0.000000",
        "GCcontent (%)": "48.6",
        "Number of CDSs": "5672",
        "Average Protein Length": "306.9",
        "Coding Ratio (%)": "84.9",
        "Number of rRNAs": "0",
        "Number of tRNAs": "50",
        "Number of CRISPRs": "0"
    },
    "has_analysis": true,
    "_dfastqc": {
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                "organism_name": "Paenibacillus glucanolyticus",
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                "species_taxid": 59843,
                "relation_to_type": "type",
                "validated": true,
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                "matched_fragments": 2022,
                "total_fragments": 2024,
                "ani_threshold": 95,
                "status": "conclusive"
            },
            {
                "organism_name": "Paenibacillus lautus",
                "strain": "strain=NBRC 15380",
                "accession": "GCA_004000945.1",
                "taxid": 1401,
                "species_taxid": 1401,
                "relation_to_type": "suspected-type",
                "validated": true,
                "ani": 85.0605,
                "matched_fragments": 1456,
                "total_fragments": 2024,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Paenibacillus solani",
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                "accession": "GCA_001277345.1",
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                "species_taxid": 1705565,
                "relation_to_type": "type",
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                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Paenibacillus ihbetae",
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                "accession": "GCA_002741055.1",
                "taxid": 1870820,
                "species_taxid": 1870820,
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                "matched_fragments": 883,
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                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Paenibacillus lactis",
                "strain": "strain=DSM 15596",
                "accession": "GCA_017873605.1",
                "taxid": 228574,
                "species_taxid": 228574,
                "relation_to_type": "type",
                "validated": true,
                "ani": 80.2382,
                "matched_fragments": 895,
                "total_fragments": 2024,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Paenibacillus yonginensis",
                "strain": "strain=DCY84",
                "accession": "GCA_001685395.1",
                "taxid": 1462996,
                "species_taxid": 1462996,
                "relation_to_type": "type",
                "validated": true,
                "ani": 76.9518,
                "matched_fragments": 153,
                "total_fragments": 2024,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Paenibacillus oralis",
                "strain": "strain=KCOM 3021",
                "accession": "GCA_003863965.1",
                "taxid": 2490856,
                "species_taxid": 2490856,
                "relation_to_type": "type",
                "validated": true,
                "ani": 76.8499,
                "matched_fragments": 177,
                "total_fragments": 2024,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Paenibacillus macerans",
                "strain": "strain=ATCC 8244",
                "accession": "GCA_000746875.1",
                "taxid": 44252,
                "species_taxid": 44252,
                "relation_to_type": "type",
                "validated": true,
                "ani": 76.6563,
                "matched_fragments": 172,
                "total_fragments": 2024,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Paenibacillus alkaliterrae",
                "strain": "strain=DSM 17040",
                "accession": "GCA_021532375.1",
                "taxid": 320909,
                "species_taxid": 320909,
                "relation_to_type": "type",
                "validated": true,
                "ani": 76.3155,
                "matched_fragments": 82,
                "total_fragments": 2024,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Paenibacillus periandrae",
                "strain": "strain=PM10",
                "accession": "GCA_022458865.1",
                "taxid": 1761741,
                "species_taxid": 1761741,
                "relation_to_type": "type",
                "validated": true,
                "ani": 75.8666,
                "matched_fragments": 70,
                "total_fragments": 2024,
                "ani_threshold": 95,
                "status": "below_threshold"
            }
        ],
        "cc_result": {
            "completeness": 100.0,
            "contamination": 0.0,
            "strain_heterogeneity": 0.0
        },
        "gtdb_result": [
            {
                "accession": "GCF_004000885.1",
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                "matched_fragments": 2022,
                "total_fragments": 2024,
                "gtdb_taxonomy": "d__Bacteria;p__Firmicutes;c__Bacilli;o__Paenibacillales;f__Paenibacillaceae;g__Paenibacillus",
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                "mean_intra_species_ani": "99.37",
                "min_intra_species_ani": "98.87",
                "mean_intra_species_af": "0.95",
                "min_intra_species_af": "0.92",
                "num_clustered_genomes": 9,
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            },
            {
                "accession": "GCF_002573715.1",
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                "num_clustered_genomes": 4,
                "status": "-"
            },
            {
                "accession": "GCF_004000945.1",
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                "gtdb_taxonomy": "d__Bacteria;p__Firmicutes;c__Bacilli;o__Paenibacillales;f__Paenibacillaceae;g__Paenibacillus",
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                "status": "-"
            },
            {
                "accession": "GCF_015326965.1",
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                "gtdb_taxonomy": "d__Bacteria;p__Firmicutes;c__Bacilli;o__Paenibacillales;f__Paenibacillaceae;g__Paenibacillus",
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                "num_clustered_genomes": 4,
                "status": "-"
            },
            {
                "accession": "GCF_014863545.1",
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                "num_clustered_genomes": 10,
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            },
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                "accession": "GCF_001277345.1",
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                "gtdb_taxonomy": "d__Bacteria;p__Firmicutes;c__Bacilli;o__Paenibacillales;f__Paenibacillaceae;g__Paenibacillus",
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            },
            {
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                "gtdb_species": "s__Paenibacillus_A oralis",
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                "gtdb_taxonomy": "d__Bacteria;p__Firmicutes;c__Bacilli;o__Paenibacillales;f__Paenibacillaceae;g__Paenibacillus_A",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            }
        ]
    },
    "_bac2feature": {
        "phenotypes": null,
        "cell_diameter": 0.477,
        "cell_length": 0.433,
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        "growth_tmp": 29.0,
        "optimum_tmp": 37.0,
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        "gc_content": 48.614,
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        "rRNA16S_genes": 10.237,
        "tRNA_genes": 93.313,
        "gram_stain": 1.0,
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        "motility": 0.918,
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        "anaerobic_respiration": 0.0,
        "aerobic_respiration": 0.0,
        "mesophilic_range_tmp": 1.0,
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        "psychrophilic_range_tmp": 0.0,
        "bacillus_cell_shape": 1.0,
        "coccus_cell_shape": 0.0,
        "filament_cell_shape": 0.0,
        "coccobacillus_cell_shape": 0.0,
        "vibrio_cell_shape": 0.0,
        "spiral_cell_shape": 0.0
    },
    "_genome_taxon": [
        "Paenibacillus",
        "glucanolyticus",
        "NBRC",
        "15330"
    ],
    "quality": 3,
    "quality_label": "\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f"
}