{ "type": "genome", "identifier": "GCF_004000905.1", "organism": "Paenibacillus humicus NBRC 102415", "title": "Paenibacillus humicus NBRC 102415", "description": "na", "data type": "Genome sequencing and assembly", "organization": "National Institute of Technology and Evaluation", "publication": [ {} ], "properties": { "assembly_accession": "GCF_004000905.1", "bioproject": "PRJNA224116", "biosample": "SAMD00034165", "wgs_master": "BIMD00000000.1", "refseq_category": "reference genome", "taxid": "1349778", "species_taxid": "412861", "organism_name": "Paenibacillus humicus NBRC 102415", "infraspecific_name": "strain=NBRC 102415", "isolate": "na", "version_status": "latest", "assembly_level": "Contig", "release_type": "Major", "genome_rep": "Full", "seq_rel_date": "2018/12/29", "asm_name": "ASM400090v1", "asm_submitter": "National Institute of Technology and Evaluation", "gbrs_paired_asm": "GCA_004000905.1", "paired_asm_comp": "identical", "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/004/000/905/GCF_004000905.1_ASM400090v1", "excluded_from_refseq": "na", "relation_to_type_material": "assembly from type material", "asm_not_live_date": "na ", "assembly_type": "haploid", "group": "bacteria", "genome_size": "5598676", "genome_size_ungapped": "5598676", "gc_percent": "58.000000", "replicon_count": "0", "scaffold_count": "115", "contig_count": "115", "annotation_provider": "NCBI RefSeq", "annotation_name": "GCF_004000905.1-RS_2024_09_09", "annotation_date": "2024-09-09", "total_gene_count": "5223", "protein_coding_gene_count": "5100", "non_coding_gene_count": "47", "pubmed_id": "na" }, "dbXrefs": [], "distribution": null, "Download": null, "status": "public", "visibility": null, "dateCreated": "2018-12-29", "dateModified": "2018-12-29", "datePublished": "2018-12-29", "_annotation": { "sample_count": 1, "sample_organism": [ "Paenibacillus humicus NBRC 102415" ], "sample_taxid": [ "1349778" ], "sample_host_organism": [], "sample_host_organism_id": [], "sample_host_disease": [], "sample_host_disease_id": [], "sample_host_location": [ "Portugal:Porto" ], "sample_host_location_id": [], "data_size": "1.578 MB", "sample_ph_range": { "min": null, "max": null }, "sample_temperature_range": { "min": null, "max": null }, "completeness": 100.0, "contamination": 0.0, "strain_heterogeneity": 0.0, "genome_count": 1 }, "data_type": "G", "data_source": "RefSeq", "_dfast": { "Total Sequence Length (bp)": "5598566", "Number of Sequences": "114", "Longest Sequences (bp)": "418746", "N50 (bp)": "90606", "Gap Ratio (%)": "0.000000", "GCcontent (%)": "58.1", "Number of CDSs": "5171", "Average Protein Length": "305.3", "Coding Ratio (%)": "84.6", "Number of rRNAs": "1", "Number of tRNAs": "42", "Number of CRISPRs": "1" }, "has_analysis": true, "_dfastqc": { "tc_result": [ { "organism_name": "Paenibacillus humicus", "strain": "strain=NBRC 102415", "accession": "GCA_004000905.1", "taxid": 412861, "species_taxid": 412861, 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"status": "below_threshold" }, { "organism_name": "Paenibacillus ginsengihumi", "strain": "strain=DSM 21568", "accession": "GCA_000380965.1", "taxid": 431596, "species_taxid": 431596, "relation_to_type": "type", "validated": true, "ani": 76.5248, "matched_fragments": 223, "total_fragments": 1808, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Paenibacillus macerans", "strain": "strain=ATCC 8244", "accession": "GCA_000746875.1", "taxid": 44252, "species_taxid": 44252, "relation_to_type": "type", "validated": true, "ani": 76.4499, "matched_fragments": 158, "total_fragments": 1808, "ani_threshold": 95, "status": "below_threshold" } ], "cc_result": { "completeness": 100.0, "contamination": 0.0, "strain_heterogeneity": 0.0 }, "gtdb_result": [ { "accession": "GCF_004000905.1", "gtdb_species": "s__Paenibacillus_O humicus", "ani": 100.0, "matched_fragments": 1803, "total_fragments": 1808, "gtdb_taxonomy": 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