{
    "type": "genome",
    "identifier": "GCF_004000945.1",
    "organism": "Paenibacillus lautus NBRC 15380",
    "title": "Paenibacillus lautus NBRC 15380",
    "description": "na",
    "data type": "Genome sequencing and assembly",
    "organization": "National Institute of Technology and Evaluation",
    "publication": [
        {}
    ],
    "properties": {
        "assembly_accession": "GCF_004000945.1",
        "bioproject": "PRJNA224116",
        "biosample": "SAMD00034170",
        "wgs_master": "BIMF00000000.1",
        "refseq_category": "reference genome",
        "taxid": "1349780",
        "species_taxid": "1401",
        "organism_name": "Paenibacillus lautus NBRC 15380",
        "infraspecific_name": "strain=NBRC 15380",
        "isolate": "na",
        "version_status": "latest",
        "assembly_level": "Contig",
        "release_type": "Major",
        "genome_rep": "Full",
        "seq_rel_date": "2018/12/29",
        "asm_name": "ASM400094v1",
        "asm_submitter": "National Institute of Technology and Evaluation",
        "gbrs_paired_asm": "GCA_004000945.1",
        "paired_asm_comp": "identical",
        "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/004/000/945/GCF_004000945.1_ASM400094v1",
        "excluded_from_refseq": "na",
        "relation_to_type_material": "assembly from type material",
        "asm_not_live_date": "na        ",
        "assembly_type": "haploid",
        "group": "bacteria",
        "genome_size": "7062432",
        "genome_size_ungapped": "7062432",
        "gc_percent": "49.500000",
        "replicon_count": "0",
        "scaffold_count": "56",
        "contig_count": "56",
        "annotation_provider": "NCBI RefSeq",
        "annotation_name": "GCF_004000945.1-RS_2024_08_26",
        "annotation_date": "2024-08-26",
        "total_gene_count": "6442",
        "protein_coding_gene_count": "6299",
        "non_coding_gene_count": "58",
        "pubmed_id": "na"
    },
    "dbXrefs": [],
    "distribution": null,
    "Download": null,
    "status": "public",
    "visibility": null,
    "dateCreated": "2018-12-29",
    "dateModified": "2018-12-29",
    "datePublished": "2018-12-29",
    "_annotation": {
        "sample_count": 1,
        "sample_organism": [
            "Paenibacillus lautus NBRC 15380"
        ],
        "sample_taxid": [
            "1349780"
        ],
        "sample_host_organism": [],
        "sample_host_organism_id": [],
        "sample_host_disease": [],
        "sample_host_disease_id": [],
        "sample_host_location": [
            "NA"
        ],
        "sample_host_location_id": [],
        "data_size": "2.020 MB",
        "sample_ph_range": {
            "min": null,
            "max": null
        },
        "sample_temperature_range": {
            "min": null,
            "max": null
        },
        "completeness": 100.0,
        "contamination": 0.38,
        "strain_heterogeneity": 0.0,
        "genome_count": 1
    },
    "data_type": "G",
    "data_source": "RefSeq",
    "_dfast": {
        "Total Sequence Length (bp)": "7062183",
        "Number of Sequences": "54",
        "Longest Sequences (bp)": "805555",
        "N50 (bp)": "256406",
        "Gap Ratio (%)": "0.000000",
        "GCcontent (%)": "49.5",
        "Number of CDSs": "6438",
        "Average Protein Length": "314.4",
        "Coding Ratio (%)": "86.0",
        "Number of rRNAs": "0",
        "Number of tRNAs": "52",
        "Number of CRISPRs": "0"
    },
    "has_analysis": true,
    "_dfastqc": {
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                "organism_name": "Paenibacillus lautus",
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                "relation_to_type": "suspected-type",
                "validated": true,
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                "status": "conclusive"
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            {
                "organism_name": "Paenibacillus glucanolyticus",
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                "species_taxid": 59843,
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                "ani": 84.998,
                "matched_fragments": 1499,
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                "status": "below_threshold"
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            {
                "organism_name": "Paenibacillus solani",
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                "species_taxid": 1705565,
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            },
            {
                "organism_name": "Paenibacillus lactis",
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                "species_taxid": 228574,
                "relation_to_type": "type",
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                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Paenibacillus ihbetae",
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                "matched_fragments": 1088,
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                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Paenibacillus dakarensis",
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                "taxid": 1527293,
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                "status": "below_threshold"
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            {
                "organism_name": "Paenibacillus sonchi",
                "strain": "strain=LMG 24727",
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                "species_taxid": 373687,
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                "ani": 77.3998,
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                "ani_threshold": 95,
                "status": "below_threshold"
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            {
                "organism_name": "Paenibacillus rhizophilus",
                "strain": "strain=7197",
                "accession": "GCA_003854965.1",
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                "status": "below_threshold"
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            {
                "organism_name": "Paenibacillus zanthoxyli",
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                "taxid": 369399,
                "species_taxid": 369399,
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                "ani": 77.0375,
                "matched_fragments": 169,
                "total_fragments": 2327,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Paenibacillus sinensis",
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                "relation_to_type": "type",
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                "ani": 76.8635,
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                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Paenibacillus thalictri",
                "strain": "strain=N2SHLJ1",
                "accession": "GCA_004307995.1",
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                "relation_to_type": "type",
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                "ani": 76.8351,
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                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Paenibacillus piscarius",
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                "accession": "GCA_022234545.1",
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                "relation_to_type": "type",
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                "ani": 76.5561,
                "matched_fragments": 212,
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                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Paenibacillus rhizovicinus",
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                "status": "below_threshold"
            },
            {
                "organism_name": "Paenibacillus alkaliterrae",
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                "accession": "GCA_021532375.1",
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                "species_taxid": 320909,
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                "ani": 76.318,
                "matched_fragments": 100,
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                "status": "below_threshold"
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        ],
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                "accession": "GCF_004000945.1",
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        ]
    },
    "_bac2feature": {
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    "_genome_taxon": [
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        "NBRC",
        "15380"
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    "quality": 3,
    "quality_label": "\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f"
}