{
    "type": "genome",
    "identifier": "GCF_004001025.1",
    "organism": "Paenibacillus amylolyticus",
    "title": "Paenibacillus amylolyticus",
    "description": "na",
    "data type": "Genome sequencing and assembly",
    "organization": "National Institute of Technology and Evaluation Biological Resource Center",
    "publication": [
        {}
    ],
    "properties": {
        "assembly_accession": "GCF_004001025.1",
        "bioproject": "PRJNA224116",
        "biosample": "SAMD00034155",
        "wgs_master": "BIMJ00000000.1",
        "refseq_category": "na",
        "taxid": "1451",
        "species_taxid": "1451",
        "organism_name": "Paenibacillus amylolyticus",
        "infraspecific_name": "strain=NBRC 15957",
        "isolate": "na",
        "version_status": "latest",
        "assembly_level": "Contig",
        "release_type": "Major",
        "genome_rep": "Full",
        "seq_rel_date": "2018/12/29",
        "asm_name": "ASM400102v1",
        "asm_submitter": "National Institute of Technology and Evaluation Biological Resource Center",
        "gbrs_paired_asm": "GCA_004001025.1",
        "paired_asm_comp": "identical",
        "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/004/001/025/GCF_004001025.1_ASM400102v1",
        "excluded_from_refseq": "na",
        "relation_to_type_material": "assembly from type material",
        "asm_not_live_date": "na        ",
        "assembly_type": "haploid",
        "group": "bacteria",
        "genome_size": "7110896",
        "genome_size_ungapped": "7110896",
        "gc_percent": "45.500000",
        "replicon_count": "0",
        "scaffold_count": "76",
        "contig_count": "76",
        "annotation_provider": "NCBI RefSeq",
        "annotation_name": "GCF_004001025.1-RS_2024_09_09",
        "annotation_date": "2024-09-09",
        "total_gene_count": "6315",
        "protein_coding_gene_count": "6231",
        "non_coding_gene_count": "32",
        "pubmed_id": "na"
    },
    "dbXrefs": [],
    "distribution": null,
    "Download": null,
    "status": "public",
    "visibility": null,
    "dateCreated": "2018-12-29",
    "dateModified": "2018-12-29",
    "datePublished": "2018-12-29",
    "_annotation": {
        "sample_count": 1,
        "sample_organism": [
            "Paenibacillus amylolyticus"
        ],
        "sample_taxid": [
            "1451"
        ],
        "sample_host_organism": [],
        "sample_host_organism_id": [],
        "sample_host_disease": [],
        "sample_host_disease_id": [],
        "sample_host_location": [
            "NA"
        ],
        "sample_host_location_id": [],
        "data_size": "2.037 MB",
        "sample_ph_range": {
            "min": null,
            "max": null
        },
        "sample_temperature_range": {
            "min": null,
            "max": null
        },
        "completeness": 100.0,
        "contamination": 0.0,
        "strain_heterogeneity": 0.0,
        "genome_count": 1
    },
    "data_type": "G",
    "data_source": "RefSeq",
    "_dfast": {
        "Total Sequence Length (bp)": "7110896",
        "Number of Sequences": "76",
        "Longest Sequences (bp)": "459058",
        "N50 (bp)": "199029",
        "Gap Ratio (%)": "0.000000",
        "GCcontent (%)": "45.6",
        "Number of CDSs": "6369",
        "Average Protein Length": "320.0",
        "Coding Ratio (%)": "86.0",
        "Number of rRNAs": "2",
        "Number of tRNAs": "25",
        "Number of CRISPRs": "1"
    },
    "has_analysis": true,
    "_dfastqc": {
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                "organism_name": "Paenibacillus amylolyticus",
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                "relation_to_type": "suspected-type",
                "validated": true,
                "ani": 100.0,
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                "ani_threshold": 95,
                "status": "inconclusive"
            },
            {
                "organism_name": "Paenibacillus xylanexedens",
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                "taxid": 528191,
                "species_taxid": 528191,
                "relation_to_type": "suspected-type",
                "validated": true,
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                "matched_fragments": 2011,
                "total_fragments": 2336,
                "ani_threshold": 95,
                "status": "inconclusive"
            },
            {
                "organism_name": "Paenibacillus pabuli",
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                "accession": "GCA_001514495.1",
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                "species_taxid": 1472,
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                "total_fragments": 2336,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Paenibacillus taichungensis",
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                "accession": "GCA_013359905.1",
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                "species_taxid": 484184,
                "relation_to_type": "type",
                "validated": true,
                "ani": 83.5268,
                "matched_fragments": 1512,
                "total_fragments": 2336,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Paenibacillus xylanivorans",
                "strain": "strain=A59",
                "accession": "GCA_001280595.1",
                "taxid": 1705561,
                "species_taxid": 1705561,
                "relation_to_type": "type",
                "validated": true,
                "ani": 83.5093,
                "matched_fragments": 1468,
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                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Paenibacillus xylanilyticus",
                "strain": "strain=LMG 21957",
                "accession": "GCA_013359935.1",
                "taxid": 248903,
                "species_taxid": 248903,
                "relation_to_type": "type",
                "validated": true,
                "ani": 82.4737,
                "matched_fragments": 1302,
                "total_fragments": 2336,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Paenibacillus illinoisensis",
                "strain": "strain=NBRC 15959",
                "accession": "GCA_004000925.1",
                "taxid": 59845,
                "species_taxid": 59845,
                "relation_to_type": "type",
                "validated": true,
                "ani": 82.2428,
                "matched_fragments": 1269,
                "total_fragments": 2336,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Paenibacillus polysaccharolyticus",
                "strain": "strain=BL9",
                "accession": "GCA_900102085.1",
                "taxid": 582692,
                "species_taxid": 582692,
                "relation_to_type": "type",
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                "ani": 81.5091,
                "matched_fragments": 1237,
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                "ani_threshold": 95,
                "status": "below_threshold"
            }
        ],
        "cc_result": {
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            "contamination": 0.0,
            "strain_heterogeneity": 0.0
        },
        "gtdb_result": [
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                "accession": "GCF_004001025.1",
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                "ani": 100.0,
                "matched_fragments": 2331,
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                "gtdb_taxonomy": "d__Bacteria;p__Firmicutes;c__Bacilli;o__Paenibacillales;f__Paenibacillaceae;g__Paenibacillus",
                "ani_circumscription_radius": 96.2155,
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                "min_intra_species_ani": "97.08",
                "mean_intra_species_af": "0.90",
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                "num_clustered_genomes": 9,
                "status": "conclusive"
            },
            {
                "accession": "GCF_001908275.1",
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                "gtdb_taxonomy": "d__Bacteria;p__Firmicutes;c__Bacilli;o__Paenibacillales;f__Paenibacillaceae;g__Paenibacillus",
                "ani_circumscription_radius": 96.2155,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
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            },
            {
                "accession": "GCF_017874615.1",
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                "matched_fragments": 2011,
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                "gtdb_taxonomy": "d__Bacteria;p__Firmicutes;c__Bacilli;o__Paenibacillales;f__Paenibacillaceae;g__Paenibacillus",
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                "mean_intra_species_ani": "N/A",
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            },
            {
                "accession": "GCF_001955855.1",
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                "mean_intra_species_ani": "N/A",
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                "gtdb_species": "s__Paenibacillus sp900101225",
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                "mean_intra_species_ani": "N/A",
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        ]
    },
    "_bac2feature": {
        "phenotypes": null,
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    "_genome_taxon": [
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        "amylolyticus"
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    "quality": 3,
    "quality_label": "\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f"
}