{ "type": "genome", "identifier": "GCF_004001065.1", "organism": "Paenibacillus xylaniclasticus", "title": "Paenibacillus xylaniclasticus", "description": "na", "data type": "Genome sequencing and assembly", "organization": "National Institute of Technology and Evaluation Biological Resource Center", "publication": [ {} ], "properties": { "assembly_accession": "GCF_004001065.1", "bioproject": "PRJNA224116", "biosample": "SAMD00034175", "wgs_master": "BIML00000000.1", "refseq_category": "reference genome", "taxid": "588083", "species_taxid": "588083", "organism_name": "Paenibacillus xylaniclasticus", "infraspecific_name": "strain=NBRC 106381", "isolate": "na", "version_status": "latest", "assembly_level": "Contig", "release_type": "Major", "genome_rep": "Full", "seq_rel_date": "2018/12/29", "asm_name": "ASM400106v1", "asm_submitter": "National Institute of Technology and Evaluation Biological Resource Center", "gbrs_paired_asm": "GCA_004001065.1", "paired_asm_comp": "identical", "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/004/001/065/GCF_004001065.1_ASM400106v1", "excluded_from_refseq": "na", "relation_to_type_material": "assembly from type material", "asm_not_live_date": "na ", "assembly_type": "haploid", "group": "bacteria", "genome_size": "4924765", "genome_size_ungapped": "4924765", "gc_percent": "49.500000", "replicon_count": "0", "scaffold_count": "106", "contig_count": "106", "annotation_provider": "NCBI RefSeq", "annotation_name": "GCF_004001065.1-RS_2024_09_09", "annotation_date": "2024-09-09", "total_gene_count": "4513", "protein_coding_gene_count": "4388", "non_coding_gene_count": "52", "pubmed_id": "na" }, "dbXrefs": [], "distribution": null, "Download": null, "status": "public", "visibility": null, "dateCreated": "2018-12-29", "dateModified": "2018-12-29", "datePublished": "2018-12-29", "_annotation": { "sample_count": 1, "sample_organism": [ "Paenibacillus xylaniclasticus" ], "sample_taxid": [ "588083" ], "sample_host_organism": [], "sample_host_organism_id": [], "sample_host_disease": [], "sample_host_disease_id": [], "sample_host_location": [ "Thailand:Bangkok" ], "sample_host_location_id": [], "data_size": "1.407 MB", "sample_ph_range": { "min": null, "max": null }, "sample_temperature_range": { "min": null, "max": null }, "completeness": 100.0, "contamination": 0.0, "strain_heterogeneity": 0.0, "genome_count": 1 }, "data_type": "G", "data_source": "RefSeq", "_dfast": { "Total Sequence Length (bp)": "4924585", "Number of Sequences": "105", "Longest Sequences (bp)": "429941", "N50 (bp)": "237058", "Gap Ratio (%)": "0.000000", "GCcontent (%)": "49.6", "Number of CDSs": "4506", "Average Protein Length": "308.8", "Coding Ratio (%)": "84.8", "Number of rRNAs": "0", "Number of tRNAs": "46", "Number of CRISPRs": "7" }, "has_analysis": true, "_dfastqc": { "tc_result": [ { "organism_name": "Paenibacillus xylaniclasticus", "strain": "strain=NBRC 106381", "accession": "GCA_004001065.1", "taxid": 588083, "species_taxid": 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