{ "type": "genome", "identifier": "GCF_004005815.1", "organism": "Mucilaginibacter limnophilus", "title": "Mucilaginibacter limnophilus", "description": "na", "data type": "Genome sequencing and assembly", "organization": "National Kaohsiung University of Science and Technology", "publication": [ {} ], "properties": { "assembly_accession": "GCF_004005815.1", "bioproject": "PRJNA224116", "biosample": "SAMN10680140", "wgs_master": "SACK00000000.1", "refseq_category": "reference genome", "taxid": "1932778", "species_taxid": "1932778", "organism_name": "Mucilaginibacter limnophilus", "infraspecific_name": "strain=YBJ-36", "isolate": "na", "version_status": "latest", "assembly_level": "Contig", "release_type": "Major", "genome_rep": "Full", "seq_rel_date": "2019/01/08", "asm_name": "ASM400581v1", "asm_submitter": "National Kaohsiung University of Science and Technology", "gbrs_paired_asm": "GCA_004005815.1", "paired_asm_comp": "identical", "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/004/005/815/GCF_004005815.1_ASM400581v1", "excluded_from_refseq": "na", "relation_to_type_material": "assembly from type material", "asm_not_live_date": "na ", "assembly_type": "haploid", "group": "bacteria", "genome_size": "4628845", "genome_size_ungapped": "4628845", "gc_percent": "43.000000", "replicon_count": "0", "scaffold_count": "40", "contig_count": "40", "annotation_provider": "NCBI RefSeq", "annotation_name": "GCF_004005815.1-RS_2024_10_23", "annotation_date": "2024-10-23", "total_gene_count": "4187", "protein_coding_gene_count": "4114", "non_coding_gene_count": "51", "pubmed_id": "na" }, "dbXrefs": [], "distribution": null, "Download": null, "status": "public", "visibility": null, "dateCreated": "2019-01-08", "dateModified": "2019-01-08", "datePublished": "2019-01-08", "_annotation": { "sample_count": 1, "sample_organism": [ "Mucilaginibacter limnophilus" ], "sample_taxid": [ "1932778" ], "sample_host_organism": [], "sample_host_organism_id": [], "sample_host_disease": [], "sample_host_disease_id": [], "sample_host_location": [ "Taiwan" ], "sample_host_location_id": [], "data_size": "1.314 MB", "sample_ph_range": { "min": null, "max": null }, "sample_temperature_range": { "min": null, "max": null }, "completeness": 100.0, "contamination": 0.0, "strain_heterogeneity": 0.0, "genome_count": 1 }, "data_type": "G", "data_source": "RefSeq", "_dfast": { "Total Sequence Length (bp)": "4628845", "Number of Sequences": "40", "Longest Sequences (bp)": "1034707", "N50 (bp)": "417795", "Gap Ratio (%)": "0.000000", "GCcontent (%)": "42.8", "Number of CDSs": "4067", "Average Protein Length": "338.7", "Coding Ratio (%)": "89.3", "Number of rRNAs": "3", "Number of tRNAs": "38", "Number of CRISPRs": "0" }, "has_analysis": true, "_dfastqc": { "tc_result": [ { "organism_name": "Mucilaginibacter limnophilus", "strain": "strain=YBJ-36", "accession": "GCA_004005815.1", "taxid": 1932778, "species_taxid": 1932778, 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77.7545, "matched_fragments": 238, "total_fragments": 1525, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Mucilaginibacter pallidiroseus", "strain": "strain=dk17", "accession": "GCA_007846085.1", "taxid": 2599295, "species_taxid": 2599295, "relation_to_type": "type", "validated": true, "ani": 77.643, "matched_fragments": 232, "total_fragments": 1525, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Mucilaginibacter oryzae", "strain": "strain=DSM 19975", "accession": "GCA_003148845.1", "taxid": 468058, "species_taxid": 468058, "relation_to_type": "type", "validated": true, "ani": 77.6359, "matched_fragments": 266, "total_fragments": 1525, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Mucilaginibacter celer", "strain": "strain=HYN0043", "accession": "GCA_003576455.2", "taxid": 2305508, "species_taxid": 2305508, "relation_to_type": "type", "validated": true, "ani": 77.6221, "matched_fragments": 288, "total_fragments": 1525, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Mucilaginibacter gossypiicola", "strain": "strain=Gh-48", "accession": "GCA_900110105.1", "taxid": 551995, "species_taxid": 551995, "relation_to_type": "type", "validated": true, "ani": 77.5822, "matched_fragments": 272, "total_fragments": 1525, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Mucilaginibacter gossypii", "strain": "strain=Gh-67", "accession": "GCA_900100945.1", "taxid": 551996, "species_taxid": 551996, "relation_to_type": "type", "validated": true, "ani": 77.5302, "matched_fragments": 267, "total_fragments": 1525, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Mucilaginibacter auburnensis", "strain": "strain=DSM 28175", "accession": "GCA_002797815.1", "taxid": 1457233, "species_taxid": 1457233, "relation_to_type": "type", "validated": true, "ani": 77.5071, "matched_fragments": 219, "total_fragments": 1525, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Mucilaginibacter phyllosphaerae", "strain": "strain=PP-F2FG21", "accession": "GCA_004378255.1", "taxid": 1812349, "species_taxid": 1812349, "relation_to_type": "type", "validated": true, "ani": 77.4508, "matched_fragments": 238, "total_fragments": 1525, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Mucilaginibacter terrigena", "strain": "strain=17JY9-4", "accession": "GCA_004168255.1", "taxid": 2492395, "species_taxid": 2492395, "relation_to_type": "type", "validated": true, "ani": 77.4459, "matched_fragments": 279, "total_fragments": 1525, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Mucilaginibacter pankratovii", "strain": "strain=ZT4R22", "accession": "GCA_014773265.1", "taxid": 2772110, "species_taxid": 2772110, "relation_to_type": "type", "validated": true, "ani": 77.4097, "matched_fragments": 264, "total_fragments": 1525, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Mucilaginibacter gilvus", "strain": "strain=F01003", "accession": "GCA_004054195.1", "taxid": 2305909, "species_taxid": 2305909, "relation_to_type": "type", "validated": true, "ani": 77.3571, "matched_fragments": 241, "total_fragments": 1525, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Mucilaginibacter lappiensis", "strain": "strain=ATCC BAA-1855", "accession": "GCA_900155965.1", "taxid": 354630, "species_taxid": 354630, "relation_to_type": "type", "validated": true, "ani": 77.2527, "matched_fragments": 243, "total_fragments": 1525, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Mucilaginibacter glaciei", "strain": "strain=ZB1P21", "accession": "GCA_014773245.1", "taxid": 2772109, "species_taxid": 2772109, "relation_to_type": "type", "validated": true, "ani": 77.2447, "matched_fragments": 204, "total_fragments": 1525, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Mucilaginibacter gotjawali", "strain": "strain=SA3-7", "accession": "GCA_002355435.1", "taxid": 1550579, "species_taxid": 1550579, "relation_to_type": "type", "validated": true, "ani": 77.2366, "matched_fragments": 219, "total_fragments": 1525, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Mucilaginibacter lappiensis", "strain": "strain=ANJLi2", "accession": "GCA_014200545.1", "taxid": 354630, "species_taxid": 354630, "relation_to_type": "type", "validated": true, "ani": 77.1889, "matched_fragments": 245, "total_fragments": 1525, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Mucilaginibacter gotjawali", "strain": "strain=CECT 8628", "accession": "GCA_014191635.1", "taxid": 1550579, "species_taxid": 1550579, "relation_to_type": "type", "validated": true, "ani": 77.1785, "matched_fragments": 217, "total_fragments": 1525, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Mucilaginibacter robiniae", "strain": "strain=F39-2", "accession": "GCA_012849215.1", "taxid": 2728022, "species_taxid": 2728022, "relation_to_type": "type", "validated": true, "ani": 77.1533, "matched_fragments": 183, "total_fragments": 1525, "ani_threshold": 95, "status": "below_threshold" } ], "cc_result": { "completeness": 100.0, "contamination": 0.0, "strain_heterogeneity": 0.0 }, "gtdb_result": [ { "accession": "GCF_004005815.1", "gtdb_species": "s__Mucilaginibacter limnophilus", "ani": 100.0, "matched_fragments": 1524, "total_fragments": 1525, "gtdb_taxonomy": "d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Sphingobacteriales;f__Sphingobacteriaceae;g__Mucilaginibacter", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "conclusive" }, { "accession": "GCF_015223065.1", "gtdb_species": "s__Mucilaginibacter sp015223065", "ani": 78.3948, "matched_fragments": 459, "total_fragments": 1525, 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