{ "type": "genome", "identifier": "GCF_004005905.1", "organism": "Novosphingobium umbonatum", "title": "Novosphingobium umbonatum", "description": "na", "data type": "Genome sequencing and assembly", "organization": "National Kaohsiung University of Science and Technology", "publication": [ {} ], "properties": { "assembly_accession": "GCF_004005905.1", "bioproject": "PRJNA224116", "biosample": "SAMN10685039", "wgs_master": "SACO00000000.1", "refseq_category": "reference genome", "taxid": "1908524", "species_taxid": "1908524", "organism_name": "Novosphingobium umbonatum", "infraspecific_name": "strain=FSY-9", "isolate": "na", "version_status": "latest", "assembly_level": "Contig", "release_type": "Major", "genome_rep": "Full", "seq_rel_date": "2019/01/08", "asm_name": "ASM400590v1", "asm_submitter": "National Kaohsiung University of Science and Technology", "gbrs_paired_asm": "GCA_004005905.1", "paired_asm_comp": "identical", "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/004/005/905/GCF_004005905.1_ASM400590v1", "excluded_from_refseq": "na", "relation_to_type_material": "assembly from type material", "asm_not_live_date": "na ", "assembly_type": "haploid", "group": "bacteria", "genome_size": "4088502", "genome_size_ungapped": "4088502", "gc_percent": "61.500000", "replicon_count": "0", "scaffold_count": "91", "contig_count": "91", "annotation_provider": "NCBI RefSeq", "annotation_name": "GCF_004005905.1-RS_2024_05_04", "annotation_date": "2024-05-04", "total_gene_count": "3715", "protein_coding_gene_count": "3600", "non_coding_gene_count": "70", "pubmed_id": "na" }, "dbXrefs": [], "distribution": null, "Download": null, "status": "public", "visibility": null, "dateCreated": "2019-01-08", "dateModified": "2019-01-08", "datePublished": "2019-01-08", "_annotation": { "sample_count": 1, "sample_organism": [ "Novosphingobium umbonatum" ], "sample_taxid": [ "1908524" ], "sample_host_organism": [], "sample_host_organism_id": [], "sample_host_disease": [], "sample_host_disease_id": [], "sample_host_location": [ "Taiwan" ], "sample_host_location_id": [], "data_size": "1.136 MB", "sample_ph_range": { "min": null, "max": null }, "sample_temperature_range": { "min": null, "max": null }, "completeness": 100.0, "contamination": 0.0, "strain_heterogeneity": 0.0, "genome_count": 1 }, "data_type": "G", "data_source": "RefSeq", "_dfast": { "Total Sequence Length (bp)": "4088502", "Number of Sequences": "91", "Longest Sequences (bp)": "538333", "N50 (bp)": "257316", "Gap Ratio (%)": "0.000000", "GCcontent (%)": "61.5", "Number of CDSs": "3625", "Average Protein Length": "339.5", "Coding Ratio (%)": "90.3", "Number of rRNAs": "1", "Number of tRNAs": "58", "Number of CRISPRs": "0" }, "has_analysis": true, "_dfastqc": { "tc_result": [ { "organism_name": "Novosphingobium umbonatum", "strain": "strain=FSY-9", "accession": "GCA_004005905.1", "taxid": 1908524, "species_taxid": 1908524, 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79.7181, "matched_fragments": 597, "total_fragments": 1335, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Novosphingobium arvoryzae", "strain": "strain=KCTC 32422", "accession": "GCA_014652615.1", "taxid": 1256514, "species_taxid": 1256514, "relation_to_type": "type", "validated": true, "ani": 78.4009, "matched_fragments": 357, "total_fragments": 1335, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Novosphingobium percolationis", "strain": "strain=c1", "accession": "GCA_020179425.1", "taxid": 2871811, "species_taxid": 2871811, "relation_to_type": "type", "validated": true, "ani": 78.1427, "matched_fragments": 342, "total_fragments": 1335, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Novosphingobium aerophilum", "strain": "strain=4Y4", "accession": "GCA_014230305.1", "taxid": 2839843, "species_taxid": 2839843, "relation_to_type": "type", "validated": true, "ani": 78.004, "matched_fragments": 312, "total_fragments": 1335, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Novosphingobium huizhouense", "strain": "strain=c7", "accession": "GCA_020179475.1", "taxid": 2866625, "species_taxid": 2866625, "relation_to_type": "type", "validated": true, "ani": 77.9655, "matched_fragments": 285, "total_fragments": 1335, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Novosphingobium flavum", "strain": "strain=NBRC 111647", "accession": "GCA_014230315.1", "taxid": 1778672, "species_taxid": 1778672, "relation_to_type": "type", "validated": true, "ani": 77.9374, "matched_fragments": 351, "total_fragments": 1335, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Novosphingobium piscinae", "strain": "strain=KCTC 42194", "accession": "GCA_014230355.1", "taxid": 1507448, "species_taxid": 1507448, "relation_to_type": "type", "validated": true, "ani": 77.591, "matched_fragments": 315, "total_fragments": 1335, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Novosphingobium fluoreni", "strain": "strain=DSM 27568", "accession": "GCA_014196615.1", "taxid": 1391222, "species_taxid": 1391222, "relation_to_type": "type", "validated": true, "ani": 77.5534, "matched_fragments": 240, "total_fragments": 1335, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Qipengyuania qiaonensis", "strain": "strain=6D47A", "accession": "GCA_019711515.1", "taxid": 2867240, "species_taxid": 2867240, "relation_to_type": "type", "validated": true, "ani": 77.5236, "matched_fragments": 158, "total_fragments": 1335, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Croceibacterium mercuriale", "strain": "strain=Coronado", "accession": "GCA_000802385.1", "taxid": 1572751, "species_taxid": 1572751, "relation_to_type": "type", "validated": true, "ani": 77.3254, "matched_fragments": 217, "total_fragments": 1335, "ani_threshold": 95, "status": "below_threshold" }, { 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