{ "type": "genome", "identifier": "GCF_004005935.1", "organism": "Neptunomonas marina", "title": "Neptunomonas marina", "description": "na", "data type": "Genome sequencing and assembly", "organization": "National Kaohsiung University of Science and Technology", "publication": [ {} ], "properties": { "assembly_accession": "GCF_004005935.1", "bioproject": "PRJNA224116", "biosample": "SAMN10685071", "wgs_master": "SACQ00000000.1", "refseq_category": "reference genome", "taxid": "1815562", "species_taxid": "1815562", "organism_name": "Neptunomonas marina", "infraspecific_name": "strain=HPM-16", "isolate": "na", "version_status": "latest", "assembly_level": "Scaffold", "release_type": "Major", "genome_rep": "Full", "seq_rel_date": "2019/01/08", "asm_name": "ASM400593v1", "asm_submitter": "National Kaohsiung University of Science and Technology", "gbrs_paired_asm": "GCA_004005935.1", "paired_asm_comp": "identical", "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/004/005/935/GCF_004005935.1_ASM400593v1", "excluded_from_refseq": "na", "relation_to_type_material": "assembly from type material", "asm_not_live_date": "na ", "assembly_type": "haploid", "group": "bacteria", "genome_size": "3681520", "genome_size_ungapped": "3681425", "gc_percent": "50.500000", "replicon_count": "0", "scaffold_count": "49", "contig_count": "49", "annotation_provider": "NCBI RefSeq", "annotation_name": "GCF_004005935.1-RS_2024_03_28", "annotation_date": "2024-03-28", "total_gene_count": "3607", "protein_coding_gene_count": "3507", "non_coding_gene_count": "80", "pubmed_id": "na" }, "dbXrefs": [], "distribution": null, "Download": null, "status": "public", "visibility": null, "dateCreated": "2019-01-08", "dateModified": "2019-01-08", "datePublished": "2019-01-08", "_annotation": { "sample_count": 1, "sample_organism": [ "Neptunomonas marina" ], "sample_taxid": [ "1815562" ], "sample_host_organism": [], "sample_host_organism_id": [], "sample_host_disease": [], "sample_host_disease_id": [], "sample_host_location": [ "Taiwan" ], "sample_host_location_id": [], "data_size": "1.054 MB", "sample_ph_range": { "min": null, "max": null }, "sample_temperature_range": { "min": null, "max": null }, "completeness": 100.0, "contamination": 0.0, "strain_heterogeneity": 0.0, "genome_count": 1 }, "data_type": "G", "data_source": "RefSeq", "_dfast": { "Total Sequence Length (bp)": "3681520", "Number of Sequences": "49", "Longest Sequences (bp)": "973680", "N50 (bp)": "371624", "Gap Ratio (%)": "0.002580", "GCcontent (%)": "50.5", "Number of CDSs": "3508", "Average Protein Length": "316.5", "Coding Ratio (%)": "90.5", "Number of rRNAs": "3", "Number of tRNAs": "68", "Number of CRISPRs": "0" }, "has_analysis": true, "_dfastqc": { "tc_result": [ { "organism_name": "Neptunomonas marina", "strain": "strain=HPM-16", "accession": "GCA_004005935.1", "taxid": 1815562, "species_taxid": 1815562, "relation_to_type": "type", "validated": true, "ani": 100.0, "matched_fragments": 1211, "total_fragments": 1213, "ani_threshold": 95, "status": "conclusive" }, { "organism_name": "Amphritea ceti", "strain": "strain=KCTC 42154", "accession": "GCA_024347215.1", "taxid": 1524258, "species_taxid": 1524258, "relation_to_type": "type", "validated": true, "ani": 79.0819, "matched_fragments": 94, "total_fragments": 1213, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Neptunomonas concharum", "strain": "strain=JCM 17730", "accession": "GCA_006148955.1", "taxid": 1031538, "species_taxid": 1031538, "relation_to_type": "type", "validated": true, "ani": 78.62, "matched_fragments": 159, "total_fragments": 1213, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Neptunomonas antarctica", "strain": "strain=DSM 22306", "accession": "GCA_900156635.1", "taxid": 619304, "species_taxid": 619304, "relation_to_type": "type", "validated": true, "ani": 78.0236, 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