{ "type": "genome", "identifier": "GCF_004010155.1", "organism": "Solirhodobacter olei", "title": "Solirhodobacter olei", "description": "na", "data type": "Genome sequencing and assembly", "organization": "Zhoukou Normal University", "publication": [ {} ], "properties": { "assembly_accession": "GCF_004010155.1", "bioproject": "PRJNA224116", "biosample": "SAMN10503010", "wgs_master": "RRYH00000000.1", "refseq_category": "reference genome", "taxid": "2493082", "species_taxid": "2493082", "organism_name": "Solirhodobacter olei", "infraspecific_name": "strain=Pet-1", "isolate": "na", "version_status": "latest", "assembly_level": "Contig", "release_type": "Major", "genome_rep": "Full", "seq_rel_date": "2019/01/09", "asm_name": "ASM401015v1", "asm_submitter": "Zhoukou Normal University", "gbrs_paired_asm": "GCA_004010155.1", "paired_asm_comp": "identical", "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/004/010/155/GCF_004010155.1_ASM401015v1", "excluded_from_refseq": "na", "relation_to_type_material": "assembly from type material", "asm_not_live_date": "na ", "assembly_type": "haploid", "group": "bacteria", "genome_size": "4778327", "genome_size_ungapped": "4778327", "gc_percent": "67.000000", "replicon_count": "0", "scaffold_count": "122", "contig_count": "122", "annotation_provider": "NCBI RefSeq", "annotation_name": "GCF_004010155.1-RS_2024_04_03", "annotation_date": "2024-04-03", "total_gene_count": "4565", "protein_coding_gene_count": "4439", "non_coding_gene_count": "52", "pubmed_id": "na" }, "dbXrefs": [], "distribution": null, "Download": null, "status": "public", "visibility": null, "dateCreated": "2019-01-09", "dateModified": "2019-01-09", "datePublished": "2019-01-09", "_annotation": { "sample_count": 1, "sample_organism": [ "Solirhodobacter olei" ], "sample_taxid": [ "2493082" ], "sample_host_organism": [], "sample_host_organism_id": [], "sample_host_disease": [], "sample_host_disease_id": [], "sample_host_location": [ "China" ], "sample_host_location_id": [], "data_size": "1.317 MB", "sample_ph_range": { "min": null, "max": null }, "sample_temperature_range": { "min": null, "max": null }, "completeness": 100.0, "contamination": 0.0, "strain_heterogeneity": 0.0, "genome_count": 1 }, "data_type": "G", "data_source": "RefSeq", "_dfast": { "Total Sequence Length (bp)": "4778327", "Number of Sequences": "122", "Longest Sequences (bp)": "463295", "N50 (bp)": "172592", "Gap Ratio (%)": "0.000000", "GCcontent (%)": "66.8", "Number of CDSs": "4533", "Average Protein Length": "307.6", "Coding Ratio (%)": "87.5", "Number of rRNAs": "3", "Number of tRNAs": "47", "Number of CRISPRs": "0" }, "has_analysis": true, "_dfastqc": { "tc_result": [ { "organism_name": "Cereibacter changlensis", "strain": "strain=JA139", "accession": "GCA_003034985.1", "taxid": 402884, "species_taxid": 402884, "relation_to_type": "type", "validated": true, "ani": 79.9977, "matched_fragments": 578, "total_fragments": 1546, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Cereibacter changlensis", "strain": "strain=DSM 18774", "accession": "GCA_003254335.1", "taxid": 402884, "species_taxid": 402884, "relation_to_type": "type", "validated": true, "ani": 79.9411, "matched_fragments": 604, "total_fragments": 1546, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Cereibacter sediminicola", "strain": "strain=JA983", "accession": "GCA_007668225.1", "taxid": 2584941, "species_taxid": 2584941, "relation_to_type": "type", "validated": true, "ani": 79.4098, "matched_fragments": 477, "total_fragments": 1546, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Cereibacter johrii", "strain": "strain=JA192", "accession": "GCA_001720585.1", "taxid": 445629, "species_taxid": 445629, "relation_to_type": "type", "validated": true, "ani": 79.3138, "matched_fragments": 505, "total_fragments": 1546, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Cereibacter johrii", "strain": "strain=JA192", "accession": "GCA_003046325.1", "taxid": 445629, "species_taxid": 445629, "relation_to_type": "type", "validated": true, "ani": 79.2805, "matched_fragments": 532, "total_fragments": 1546, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Sinirhodobacter hankyongi", "strain": "strain=BO-81", "accession": "GCA_003664585.1", "taxid": 2294033, "species_taxid": 2294033, "relation_to_type": "type", "validated": true, "ani": 79.265, "matched_fragments": 505, "total_fragments": 1546, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Sinirhodobacter ferrireducens", "strain": "strain=CCTCC AB2012026", "accession": "GCA_004022265.1", "taxid": 1215032, "species_taxid": 1215032, "relation_to_type": "type", "validated": true, "ani": 79.2122, "matched_fragments": 503, "total_fragments": 1546, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Frigidibacter albus", "strain": "strain=SP32", "accession": "GCA_010993795.1", "taxid": 1465486, "species_taxid": 1465486, "relation_to_type": "type", "validated": true, "ani": 79.0637, "matched_fragments": 543, "total_fragments": 1546, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Frigidibacter albus", "strain": "strain=CGMCC 1.13995", "accession": "GCA_014640395.1", "taxid": 1465486, "species_taxid": 1465486, "relation_to_type": "type", "validated": true, "ani": 79.0529, "matched_fragments": 537, "total_fragments": 1546, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Sinirhodobacter huangdaonensis", "strain": "strain=CGMCC 1.12963", "accession": "GCA_004022465.1", "taxid": 2501515, "species_taxid": 2501515, "relation_to_type": "type", "validated": true, "ani": 79.0491, "matched_fragments": 525, "total_fragments": 1546, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Frigidibacter albus", "strain": "strain=SP32", "accession": "GCA_009908165.1", "taxid": 1465486, "species_taxid": 1465486, "relation_to_type": "type", "validated": true, "ani": 79.0381, "matched_fragments": 539, "total_fragments": 1546, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Frigidibacter albus", "strain": "strain=SP32", "accession": "GCA_009881095.1", "taxid": 1465486, "species_taxid": 1465486, "relation_to_type": "type", "validated": true, "ani": 78.9983, "matched_fragments": 544, "total_fragments": 1546, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Frigidibacter mobilis", "strain": "strain=cai42", "accession": "GCA_001620265.1", "taxid": 1335048, "species_taxid": 1335048, "relation_to_type": "type", "validated": true, "ani": 78.9591, "matched_fragments": 523, "total_fragments": 1546, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Rhodobacter flagellatus", "strain": "strain=SYSU G03088", "accession": "GCA_008271465.1", "taxid": 2593021, "species_taxid": 2593021, "relation_to_type": "type", "validated": true, "ani": 78.9427, "matched_fragments": 520, "total_fragments": 1546, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Rhodovulum visakhapatnamense", "strain": "strain=JA181", "accession": "GCA_004365965.1", "taxid": 364297, "species_taxid": 364297, "relation_to_type": "type", "validated": true, "ani": 78.7878, "matched_fragments": 455, "total_fragments": 1546, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Rhodovulum euryhalinum", "strain": "strain=DSM 4868", "accession": "GCA_004342445.1", "taxid": 35805, "species_taxid": 35805, "relation_to_type": "type", "validated": true, "ani": 78.757, "matched_fragments": 451, "total_fragments": 1546, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Rhodovulum robiginosum", "strain": "strain=DSM 12329", "accession": "GCA_003944755.1", "taxid": 68292, "species_taxid": 68292, "relation_to_type": "type", "validated": true, "ani": 78.7477, "matched_fragments": 465, "total_fragments": 1546, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Thioclava atlantica", "strain": "strain=13D2W-2", "accession": "GCA_000737065.1", "taxid": 1317124, "species_taxid": 1317124, "relation_to_type": "type", "validated": true, "ani": 78.6378, "matched_fragments": 484, "total_fragments": 1546, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Phaeovulum vinaykumarii", "strain": "strain=JA123", "accession": "GCA_900217755.1", "taxid": 407234, "species_taxid": 407234, "relation_to_type": "type", "validated": true, "ani": 78.4481, "matched_fragments": 435, "total_fragments": 1546, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Phaeovulum vinaykumarii", "strain": "strain=DSM 18714", "accession": "GCA_900156695.1", "taxid": 407234, "species_taxid": 407234, "relation_to_type": "type", "validated": true, "ani": 78.4239, "matched_fragments": 435, "total_fragments": 1546, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Thioclava pacifica", "strain": "strain=DSM 10166", "accession": "GCA_000714535.1", "taxid": 285109, "species_taxid": 285109, "relation_to_type": "type", "validated": true, "ani": 78.4121, "matched_fragments": 398, "total_fragments": 1546, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Rhodovulum strictum", "strain": "strain=DSM 11289", "accession": "GCA_009649175.1", "taxid": 58314, "species_taxid": 58314, "relation_to_type": "type", "validated": true, "ani": 78.3872, "matched_fragments": 416, "total_fragments": 1546, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Thioclava sediminum", "strain": "strain=TAW-CT134", "accession": "GCA_002020355.1", "taxid": 1915319, "species_taxid": 1915319, "relation_to_type": "type", "validated": true, "ani": 78.3595, "matched_fragments": 436, "total_fragments": 1546, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Mangrovicoccus algicola", "strain": "strain=HB182678", "accession": "GCA_014903745.1", "taxid": 2771008, "species_taxid": 2771008, "relation_to_type": "type", "validated": true, "ani": 78.1627, "matched_fragments": 434, "total_fragments": 1546, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Rhodobacter capsulatus", "strain": "strain=DSM 1710", "accession": "GCA_003254295.1", "taxid": 1061, "species_taxid": 1061, "relation_to_type": "type", "validated": true, "ani": 78.1128, "matched_fragments": 443, "total_fragments": 1546, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Halovulum marinum", "strain": "strain=2CG4", "accession": "GCA_009697225.1", "taxid": 2662447, "species_taxid": 2662447, "relation_to_type": "type", "validated": true, "ani": 78.1066, "matched_fragments": 492, "total_fragments": 1546, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Gemmobacter lutimaris", "strain": "strain=YJ-T1-11", "accession": "GCA_003570715.1", "taxid": 2306023, "species_taxid": 2306023, "relation_to_type": "type", "validated": true, "ani": 78.0522, "matched_fragments": 457, "total_fragments": 1546, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Roseibacterium elongatum", "strain": "strain=DFL-43", "accession": "GCA_000590925.1", "taxid": 159346, "species_taxid": 159346, "relation_to_type": "type", "validated": true, "ani": 77.7582, "matched_fragments": 329, "total_fragments": 1546, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Gemmobacter megaterium", "strain": "strain=CGMCC 1.11024", "accession": "GCA_014636395.1", "taxid": 1086013, "species_taxid": 1086013, "relation_to_type": "type", "validated": true, "ani": 77.6177, "matched_fragments": 317, "total_fragments": 1546, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Gemmobacter megaterium", "strain": "strain=DSM 26375", "accession": "GCA_900156815.1", "taxid": 1086013, "species_taxid": 1086013, "relation_to_type": "type", "validated": true, "ani": 77.6068, "matched_fragments": 318, "total_fragments": 1546, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Salipiger pallidus", "strain": "strain=CGMCC 1.15762", "accession": "GCA_014643635.1", "taxid": 1775170, "species_taxid": 1775170, "relation_to_type": "type", "validated": true, "ani": 77.5997, "matched_fragments": 330, "total_fragments": 1546, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Alexandriicola marinus", "strain": "strain=LZ-14", "accession": "GCA_004000435.1", "taxid": 2081710, "species_taxid": 2081710, "relation_to_type": "type", "validated": true, "ani": 77.408, "matched_fragments": 319, "total_fragments": 1546, "ani_threshold": 95, "status": "below_threshold" } ], "cc_result": { "completeness": 100.0, "contamination": 0.0, "strain_heterogeneity": 0.0 }, "gtdb_result": [ { "accession": "GCF_004010155.1", "gtdb_species": "s__Solirhodobacter olei", "ani": 100.0, "matched_fragments": 1543, "total_fragments": 1546, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Alphaproteobacteria;o__Rhodobacterales;f__Rhodobacteraceae;g__Solirhodobacter", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "conclusive" }, { "accession": "GCA_016124615.1", "gtdb_species": "s__Solirhodobacter sp016124615", "ani": 80.6695, "matched_fragments": 781, "total_fragments": 1546, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Alphaproteobacteria;o__Rhodobacterales;f__Rhodobacteraceae;g__Solirhodobacter", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCF_002871005.1", "gtdb_species": "s__Acidimangrovimonas sediminis", 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79.6132, "matched_fragments": 526, "total_fragments": 1546, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Alphaproteobacteria;o__Rhodobacterales;f__Rhodobacteraceae;g__Cereibacter_A", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCF_011043545.1", "gtdb_species": "s__JAAKGP01 sp011043545", "ani": 79.5264, "matched_fragments": 585, "total_fragments": 1546, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Alphaproteobacteria;o__Rhodobacterales;f__Rhodobacteraceae;g__JAAKGP01", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCA_008933605.1", "gtdb_species": "s__Albidovulum sp008933605", "ani": 79.5133, "matched_fragments": 451, 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