{ "type": "genome", "identifier": "GCF_004011095.1", "organism": "Rathayibacter rathayi", "title": "Rathayibacter rathayi", "description": "na", "data type": "Genome sequencing and assembly", "organization": "University of Idaho", "publication": [ {} ], "properties": { "assembly_accession": "GCF_004011095.1", "bioproject": "PRJNA224116", "biosample": "SAMN08328451", "wgs_master": "na", "refseq_category": "reference genome", "taxid": "33887", "species_taxid": "33887", "organism_name": "Rathayibacter rathayi", "infraspecific_name": "strain=DSM 7485", "isolate": "na", "version_status": "latest", "assembly_level": "Complete Genome", "release_type": "Major", "genome_rep": "Full", "seq_rel_date": "2019/01/10", "asm_name": "ASM401109v1", "asm_submitter": "University of Idaho", "gbrs_paired_asm": "GCA_004011095.1", "paired_asm_comp": "identical", "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/004/011/095/GCF_004011095.1_ASM401109v1", "excluded_from_refseq": "na", "relation_to_type_material": "assembly from type material", "asm_not_live_date": "na ", "assembly_type": "haploid", "group": "bacteria", "genome_size": "3103889", "genome_size_ungapped": "3103889", "gc_percent": "69.500000", "replicon_count": "1", "scaffold_count": "1", "contig_count": "1", "annotation_provider": "NCBI RefSeq", "annotation_name": "GCF_004011095.1-RS_2024_03_28", "annotation_date": "2024-03-28", "total_gene_count": "3028", "protein_coding_gene_count": "2925", "non_coding_gene_count": "55", "pubmed_id": "na" }, "dbXrefs": [], "distribution": null, "Download": null, "status": "public", "visibility": null, "dateCreated": "2019-01-10", "dateModified": "2019-01-10", "datePublished": "2019-01-10", "_annotation": { "sample_count": 1, "sample_organism": [ "Rathayibacter rathayi" ], "sample_taxid": [ "33887" ], "sample_host_organism": [ "Dactylis glomerata" ], "sample_host_organism_id": [], "sample_host_disease": [], "sample_host_disease_id": [], "sample_host_location": [ "New 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95, "status": "conclusive" }, { "organism_name": "Rathayibacter rathayi", "strain": "strain=DSM 7485", "accession": "GCA_007828845.1", "taxid": 33887, "species_taxid": 33887, "relation_to_type": "type", "validated": true, "ani": 99.9959, "matched_fragments": 1031, "total_fragments": 1034, "ani_threshold": 95, "status": "conclusive" }, { "organism_name": "Rathayibacter rathayi", "strain": "strain=VKM Ac-1601", "accession": "GCA_900215645.1", "taxid": 33887, "species_taxid": 33887, "relation_to_type": "type", "validated": true, "ani": 99.9756, "matched_fragments": 1005, "total_fragments": 1034, "ani_threshold": 95, "status": "conclusive" }, { "organism_name": "Rathayibacter rathayi", "strain": "strain=VKM Ac-1601", "accession": "GCA_009806975.1", "taxid": 33887, "species_taxid": 33887, "relation_to_type": "type", "validated": true, "ani": 99.9722, "matched_fragments": 994, "total_fragments": 1034, "ani_threshold": 95, "status": "conclusive" }, { "organism_name": "Rathayibacter tritici", 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"GCA_021442325.1", "taxid": 1389020, "species_taxid": 1389020, "relation_to_type": "type", "validated": true, "ani": 78.6953, "matched_fragments": 310, "total_fragments": 1034, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Agromyces archimandritae", "strain": "strain=G127AT", "accession": "GCA_018024495.1", "taxid": 2781962, "species_taxid": 2781962, "relation_to_type": "type", "validated": true, "ani": 78.4516, "matched_fragments": 334, "total_fragments": 1034, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Agromyces cavernae", "strain": "strain=SYSU K20354", "accession": "GCA_021044935.1", "taxid": 2898659, "species_taxid": 2898659, "relation_to_type": "type", "validated": true, "ani": 78.234, "matched_fragments": 350, "total_fragments": 1034, "ani_threshold": 95, "status": "below_threshold" } ], "cc_result": { "completeness": 100.0, "contamination": 0.0, "strain_heterogeneity": 0.0 }, "gtdb_result": [ { "accession": 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