{
    "type": "genome",
    "identifier": "GCF_004011135.1",
    "organism": "Rathayibacter festucae DSM 15932",
    "title": "Rathayibacter festucae DSM 15932",
    "description": "na",
    "data type": "Genome sequencing and assembly",
    "organization": "University of Idaho",
    "publication": [
        {}
    ],
    "properties": {
        "assembly_accession": "GCF_004011135.1",
        "bioproject": "PRJNA224116",
        "biosample": "SAMN08328450",
        "wgs_master": "na",
        "refseq_category": "reference genome",
        "taxid": "1328866",
        "species_taxid": "110937",
        "organism_name": "Rathayibacter festucae DSM 15932",
        "infraspecific_name": "strain=DSM 15932",
        "isolate": "na",
        "version_status": "latest",
        "assembly_level": "Complete Genome",
        "release_type": "Major",
        "genome_rep": "Full",
        "seq_rel_date": "2019/01/10",
        "asm_name": "ASM401113v1",
        "asm_submitter": "University of Idaho",
        "gbrs_paired_asm": "GCA_004011135.1",
        "paired_asm_comp": "identical",
        "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/004/011/135/GCF_004011135.1_ASM401113v1",
        "excluded_from_refseq": "na",
        "relation_to_type_material": "assembly from type material",
        "asm_not_live_date": "na        ",
        "assembly_type": "haploid",
        "group": "bacteria",
        "genome_size": "4359758",
        "genome_size_ungapped": "4359758",
        "gc_percent": "72.500000",
        "replicon_count": "1",
        "scaffold_count": "1",
        "contig_count": "1",
        "annotation_provider": "NCBI RefSeq",
        "annotation_name": "GCF_004011135.1-RS_2024_04_22",
        "annotation_date": "2024-04-22",
        "total_gene_count": "4029",
        "protein_coding_gene_count": "3951",
        "non_coding_gene_count": "55",
        "pubmed_id": "na"
    },
    "dbXrefs": [],
    "distribution": null,
    "Download": null,
    "status": "public",
    "visibility": null,
    "dateCreated": "2019-01-10",
    "dateModified": "2019-01-10",
    "datePublished": "2019-01-10",
    "_annotation": {
        "sample_count": 1,
        "sample_organism": [
            "Rathayibacter festucae DSM 15932"
        ],
        "sample_taxid": [
            "1328866"
        ],
        "sample_host_organism": [
            "Fetuca"
        ],
        "sample_host_organism_id": [],
        "sample_host_disease": [],
        "sample_host_disease_id": [],
        "sample_host_location": [
            "Russia"
        ],
        "sample_host_location_id": [],
        "data_size": "1.138 MB",
        "sample_ph_range": {
            "min": null,
            "max": null
        },
        "sample_temperature_range": {
            "min": null,
            "max": null
        },
        "completeness": 100.0,
        "contamination": 0.0,
        "strain_heterogeneity": 0.0,
        "genome_count": 1
    },
    "data_type": "G",
    "data_source": "RefSeq",
    "_dfast": {
        "Total Sequence Length (bp)": "4359758",
        "Number of Sequences": "1",
        "Longest Sequences (bp)": "4359758",
        "N50 (bp)": "4359758",
        "Gap Ratio (%)": "0.000000",
        "GCcontent (%)": "72.3",
        "Number of CDSs": "4035",
        "Average Protein Length": "320.0",
        "Coding Ratio (%)": "88.8",
        "Number of rRNAs": "6",
        "Number of tRNAs": "52",
        "Number of CRISPRs": "0"
    },
    "has_analysis": true,
    "_dfastqc": {
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                "organism_name": "Rathayibacter festucae",
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                "species_taxid": 110937,
                "relation_to_type": "type",
                "validated": true,
                "ani": 100.0,
                "matched_fragments": 1452,
                "total_fragments": 1453,
                "ani_threshold": 95,
                "status": "conclusive"
            },
            {
                "organism_name": "Rathayibacter oskolensis",
                "strain": "strain=VKM Ac-2121",
                "accession": "GCA_900177245.1",
                "taxid": 1891671,
                "species_taxid": 1891671,
                "relation_to_type": "type",
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                "ani": 86.1989,
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                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Rathayibacter caricis",
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                "accession": "GCA_003044275.1",
                "taxid": 110936,
                "species_taxid": 110936,
                "relation_to_type": "type",
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                "ani": 86.1554,
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            },
            {
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                "relation_to_type": "type",
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                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Rathayibacter tanaceti",
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                "relation_to_type": "type",
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                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Rathayibacter tritici",
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                "accession": "GCA_002932875.1",
                "taxid": 33888,
                "species_taxid": 33888,
                "relation_to_type": "type",
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                "ani": 84.995,
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                "total_fragments": 1453,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Rathayibacter rathayi",
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                "accession": "GCA_900215645.1",
                "taxid": 33887,
                "species_taxid": 33887,
                "relation_to_type": "type",
                "validated": true,
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                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Rathayibacter rathayi",
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                "species_taxid": 33887,
                "relation_to_type": "type",
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                "status": "below_threshold"
            },
            {
                "organism_name": "Rathayibacter rathayi",
                "strain": "strain=DSM 7485",
                "accession": "GCA_007828845.1",
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                "species_taxid": 33887,
                "relation_to_type": "type",
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                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Rathayibacter agropyri",
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                "accession": "GCA_013249015.1",
                "taxid": 1634927,
                "species_taxid": 1634927,
                "relation_to_type": "type",
                "validated": true,
                "ani": 83.946,
                "matched_fragments": 760,
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                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Clavibacter michiganensis subsp. tessellarius",
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                "accession": "GCA_002240635.1",
                "taxid": 31965,
                "species_taxid": 28447,
                "relation_to_type": "type",
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                "ani": 79.749,
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                "total_fragments": 1453,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Clavibacter michiganensis subsp. tessellarius",
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                "accession": "GCA_021922985.1",
                "taxid": 31965,
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                "relation_to_type": "type",
                "validated": true,
                "ani": 79.7454,
                "matched_fragments": 580,
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                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Clavibacter michiganensis",
                "strain": "strain=LMG7333",
                "accession": "GCA_021216655.1",
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                "relation_to_type": "suspected-type",
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                "matched_fragments": 564,
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                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Agromyces mariniharenae",
                "strain": "strain=NEAU-184",
                "accession": "GCA_008122505.1",
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        ],
        "cc_result": {
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                "accession": "GCF_004011135.1",
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                "gtdb_taxonomy": "d__Bacteria;p__Actinobacteriota;c__Actinomycetia;o__Actinomycetales;f__Microbacteriaceae;g__Rathayibacter",
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            {
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            {
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                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
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                "num_clustered_genomes": 1,
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        ]
    },
    "_bac2feature": {
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    "_genome_taxon": [
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        "festucae",
        "DSM",
        "15932"
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    "quality_label": "\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f"
}