{ "type": "genome", "identifier": "GCF_004011175.1", "organism": "Mesobaculum littorinae", "title": "Mesobaculum littorinae", "description": "na", "data type": "Genome sequencing and assembly", "organization": "Guangxi Academy of Sciences", "publication": [ {} ], "properties": { "assembly_accession": "GCF_004011175.1", "bioproject": "PRJNA224116", "biosample": "SAMN10364425", "wgs_master": "RQXX00000000.1", "refseq_category": "reference genome", "taxid": "2486419", "species_taxid": "2486419", "organism_name": "Mesobaculum littorinae", "infraspecific_name": "strain=M0103", "isolate": "na", "version_status": "latest", "assembly_level": "Contig", "release_type": "Major", "genome_rep": "Full", "seq_rel_date": "2019/01/10", "asm_name": "ASM401117v1", "asm_submitter": "Guangxi Academy of Sciences", "gbrs_paired_asm": "GCA_004011175.1", "paired_asm_comp": "identical", "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/004/011/175/GCF_004011175.1_ASM401117v1", "excluded_from_refseq": "na", "relation_to_type_material": "assembly from type material", "asm_not_live_date": "na ", "assembly_type": "haploid", "group": "bacteria", "genome_size": "3969393", "genome_size_ungapped": "3969393", "gc_percent": "68.000000", "replicon_count": "0", "scaffold_count": "23", "contig_count": "23", "annotation_provider": "NCBI RefSeq", "annotation_name": "GCF_004011175.1-RS_2024_12_11", "annotation_date": "2024-12-11", "total_gene_count": "3736", "protein_coding_gene_count": "3634", "non_coding_gene_count": "48", "pubmed_id": "na" }, "dbXrefs": [], "distribution": null, "Download": null, "status": "public", "visibility": null, "dateCreated": "2019-01-10", "dateModified": "2019-01-10", "datePublished": "2019-01-10", "_annotation": { "sample_count": 1, "sample_organism": [ "Mesobaculum littorinae" ], "sample_taxid": [ "2486419" ], "sample_host_organism": [ "Littoraria scabra" ], "sample_host_organism_id": [], "sample_host_disease": [], "sample_host_disease_id": [], 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"below_threshold" }, { "organism_name": "Palleronia marisminoris", "strain": "strain=DSM 26347", "accession": "GCA_900113405.1", "taxid": 315423, "species_taxid": 315423, "relation_to_type": "type", "validated": true, "ani": 78.9438, "matched_fragments": 486, "total_fragments": 1312, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Roseivivax isoporae", "strain": "strain=LMG 25204", "accession": "GCA_000521865.1", "taxid": 591206, "species_taxid": 591206, "relation_to_type": "type", "validated": true, "ani": 78.7174, "matched_fragments": 520, "total_fragments": 1312, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Palleronia sediminis", "strain": "strain=SS33", "accession": "GCA_004358695.1", "taxid": 2547833, "species_taxid": 2547833, "relation_to_type": "type", "validated": true, "ani": 78.7012, "matched_fragments": 467, "total_fragments": 1312, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Wenxinia marina", "strain": "strain=DSM 24838", "accession": "GCA_000379485.1", "taxid": 390641, "species_taxid": 390641, "relation_to_type": "type", "validated": true, "ani": 78.6538, "matched_fragments": 468, "total_fragments": 1312, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Wenxinia marina", "strain": "strain=CGMCC 1.6105", "accession": "GCA_014645075.1", "taxid": 390641, "species_taxid": 390641, "relation_to_type": "type", "validated": true, "ani": 78.6313, "matched_fragments": 475, "total_fragments": 1312, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Rhodovulum sulfidophilum", "strain": "strain=DSM 1374", "accession": "GCA_000520135.2", "taxid": 35806, "species_taxid": 35806, "relation_to_type": "type", "validated": true, "ani": 78.5906, "matched_fragments": 455, "total_fragments": 1312, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Rhodovulum sulfidophilum", "strain": "strain=DSM 1374", "accession": "GCA_001633165.1", "taxid": 35806, "species_taxid": 35806, "relation_to_type": "type", "validated": true, "ani": 78.5792, "matched_fragments": 452, "total_fragments": 1312, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Salibaculum halophilum", "strain": "strain=WDS1C4", "accession": "GCA_002094885.1", "taxid": 1914408, "species_taxid": 1914408, "relation_to_type": "type", "validated": true, "ani": 78.4727, "matched_fragments": 383, "total_fragments": 1312, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Cribrihabitans marinus", "strain": "strain=CGMCC 1.13219", "accession": "GCA_014640375.1", "taxid": 1227549, "species_taxid": 1227549, "relation_to_type": "type", "validated": true, "ani": 78.4673, "matched_fragments": 427, "total_fragments": 1312, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Rhodovulum tesquicola", "strain": "strain=A-36s", "accession": "GCA_024128855.1", "taxid": 540254, "species_taxid": 540254, "relation_to_type": "type", "validated": true, "ani": 78.4435, "matched_fragments": 420, "total_fragments": 1312, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Cribrihabitans marinus", "strain": "strain=DSM 29340", "accession": "GCA_900109035.1", "taxid": 1227549, "species_taxid": 1227549, "relation_to_type": "type", "validated": true, "ani": 78.4177, "matched_fragments": 437, "total_fragments": 1312, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Maritimibacter harenae", "strain": "strain=DP07", "accession": "GCA_009882975.1", "taxid": 2606218, "species_taxid": 2606218, "relation_to_type": "type", "validated": true, "ani": 78.3913, "matched_fragments": 423, "total_fragments": 1312, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Roseitranquillus sediminis", "strain": "strain=MCCB 386", "accession": "GCA_016918935.1", "taxid": 2809051, "species_taxid": 2809051, "relation_to_type": "type", "validated": true, "ani": 78.3457, "matched_fragments": 373, "total_fragments": 1312, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Silicimonas algicola", "strain": "strain=KC90", "accession": "GCA_003970735.1", "taxid": 1826607, "species_taxid": 1826607, "relation_to_type": "type", "validated": true, "ani": 78.343, "matched_fragments": 338, "total_fragments": 1312, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Roseibacterium elongatum", "strain": "strain=DFL-43", "accession": "GCA_000590925.1", "taxid": 159346, "species_taxid": 159346, "relation_to_type": "type", "validated": true, "ani": 78.3283, "matched_fragments": 364, "total_fragments": 1312, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Salipiger bermudensis", "strain": "strain=HTCC2601", "accession": "GCA_000153725.1", "taxid": 344736, "species_taxid": 344736, "relation_to_type": "type", "validated": true, "ani": 78.3113, "matched_fragments": 507, 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"strain=DSS-3", "accession": "GCA_000011965.2", "taxid": 89184, "species_taxid": 89184, "relation_to_type": "suspected-type", "validated": true, "ani": 77.9362, "matched_fragments": 405, "total_fragments": 1312, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Pacificitalea manganoxidans", "strain": "strain=DY25", "accession": "GCA_002504165.1", "taxid": 1411902, "species_taxid": 1411902, "relation_to_type": "type", "validated": true, "ani": 77.7757, "matched_fragments": 356, "total_fragments": 1312, "ani_threshold": 95, "status": "below_threshold" } ], "cc_result": { "completeness": 100.0, "contamination": 0.0, "strain_heterogeneity": 0.0 }, "gtdb_result": [ { "accession": "GCF_004011175.1", "gtdb_species": "s__Tranquillimonas littorinae", "ani": 100.0, "matched_fragments": 1310, "total_fragments": 1312, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Alphaproteobacteria;o__Rhodobacterales;f__Rhodobacteraceae;g__Tranquillimonas", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "conclusive" }, { "accession": "GCF_900115595.1", "gtdb_species": "s__Tranquillimonas alkanivorans", "ani": 79.8242, "matched_fragments": 596, "total_fragments": 1312, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Alphaproteobacteria;o__Rhodobacterales;f__Rhodobacteraceae;g__Tranquillimonas", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCF_002869745.1", "gtdb_species": "s__Oceaniglobus roseus", "ani": 79.3217, "matched_fragments": 556, "total_fragments": 1312, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Alphaproteobacteria;o__Rhodobacterales;f__Rhodobacteraceae;g__Oceaniglobus", "ani_circumscription_radius": 95.0, 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