{
    "type": "genome",
    "identifier": "GCF_004011835.1",
    "organism": "Rhodococcus spongiicola",
    "title": "Rhodococcus spongiicola",
    "description": "na",
    "data type": "Genome sequencing and assembly",
    "organization": "Ren Ji Hospital School of Medicine, Shanghai Jiao Tong University",
    "publication": [
        {}
    ],
    "properties": {
        "assembly_accession": "GCF_004011835.1",
        "bioproject": "PRJNA224116",
        "biosample": "SAMN10395175",
        "wgs_master": "RKLN00000000.1",
        "refseq_category": "reference genome",
        "taxid": "2487352",
        "species_taxid": "2487352",
        "organism_name": "Rhodococcus spongiicola",
        "infraspecific_name": "strain=LHW50502",
        "isolate": "na",
        "version_status": "latest",
        "assembly_level": "Scaffold",
        "release_type": "Major",
        "genome_rep": "Full",
        "seq_rel_date": "2019/01/10",
        "asm_name": "ASM401183v1",
        "asm_submitter": "Ren Ji Hospital School of Medicine, Shanghai Jiao Tong University",
        "gbrs_paired_asm": "GCA_004011835.1",
        "paired_asm_comp": "identical",
        "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/004/011/835/GCF_004011835.1_ASM401183v1",
        "excluded_from_refseq": "na",
        "relation_to_type_material": "assembly from type material",
        "asm_not_live_date": "na        ",
        "assembly_type": "haploid",
        "group": "bacteria",
        "genome_size": "3967637",
        "genome_size_ungapped": "3967337",
        "gc_percent": "66.500000",
        "replicon_count": "0",
        "scaffold_count": "29",
        "contig_count": "29",
        "annotation_provider": "NCBI RefSeq",
        "annotation_name": "GCF_004011835.1-RS_2024_12_11",
        "annotation_date": "2024-12-11",
        "total_gene_count": "3648",
        "protein_coding_gene_count": "3548",
        "non_coding_gene_count": "62",
        "pubmed_id": "na"
    },
    "dbXrefs": [],
    "distribution": null,
    "Download": null,
    "status": "public",
    "visibility": null,
    "dateCreated": "2019-01-10",
    "dateModified": "2019-01-10",
    "datePublished": "2019-01-10",
    "_annotation": {
        "sample_count": 1,
        "sample_organism": [
            "Rhodococcus spongiicola"
        ],
        "sample_taxid": [
            "2487352"
        ],
        "sample_host_organism": [],
        "sample_host_organism_id": [],
        "sample_host_disease": [],
        "sample_host_disease_id": [],
        "sample_host_location": [
            "China: Xisha"
        ],
        "sample_host_location_id": [],
        "data_size": "1.086 MB",
        "sample_ph_range": {
            "min": null,
            "max": null
        },
        "sample_temperature_range": {
            "min": null,
            "max": null
        },
        "completeness": 100.0,
        "contamination": 0.0,
        "strain_heterogeneity": 0.0,
        "genome_count": 1
    },
    "data_type": "G",
    "data_source": "RefSeq",
    "_dfast": {
        "Total Sequence Length (bp)": "3967637",
        "Number of Sequences": "29",
        "Longest Sequences (bp)": "995729",
        "N50 (bp)": "727511",
        "Gap Ratio (%)": "0.007561",
        "GCcontent (%)": "66.5",
        "Number of CDSs": "3604",
        "Average Protein Length": "323.6",
        "Coding Ratio (%)": "88.2",
        "Number of rRNAs": "3",
        "Number of tRNAs": "61",
        "Number of CRISPRs": "0"
    },
    "has_analysis": true,
    "_dfastqc": {
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                "organism_name": "Rhodococcus spongiicola",
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                "relation_to_type": "type",
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                "ani_threshold": 95,
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            },
            {
                "organism_name": "Rhodococcus xishaensis",
                "strain": "strain=LHW51113",
                "accession": "GCA_004011825.1",
                "taxid": 2487364,
                "species_taxid": 2487364,
                "relation_to_type": "type",
                "validated": true,
                "ani": 91.9432,
                "matched_fragments": 1156,
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                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Prescottella agglutinans",
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                "accession": "GCA_004011865.1",
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                "species_taxid": 1644129,
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                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Prescottella equi",
                "strain": "strain=NBRC 101255",
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                "species_taxid": 43767,
                "relation_to_type": "type",
                "validated": true,
                "ani": 82.2719,
                "matched_fragments": 857,
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                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Prescottella equi",
                "strain": "strain=DSM 20307",
                "accession": "GCA_002094305.1",
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                "relation_to_type": "type",
                "validated": true,
                "ani": 82.1812,
                "matched_fragments": 872,
                "total_fragments": 1311,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Prescottella equi",
                "strain": "strain=NCTC1621",
                "accession": "GCA_900455845.1",
                "taxid": 43767,
                "species_taxid": 43767,
                "relation_to_type": "type",
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                "ani": 82.1595,
                "matched_fragments": 890,
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                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Prescottella defluvii",
                "strain": "strain=Ca11",
                "accession": "GCA_000738775.1",
                "taxid": 1323361,
                "species_taxid": 1323361,
                "relation_to_type": "type",
                "validated": true,
                "ani": 82.1552,
                "matched_fragments": 854,
                "total_fragments": 1311,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Prescottella subtropica",
                "strain": "strain=C9-28",
                "accession": "GCA_005434945.1",
                "taxid": 2545757,
                "species_taxid": 2545757,
                "relation_to_type": "type",
                "validated": true,
                "ani": 81.9499,
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                "ani_threshold": 95,
                "status": "below_threshold"
            }
        ],
        "cc_result": {
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            "contamination": 0.0,
            "strain_heterogeneity": 0.0
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        "gtdb_result": [
            {
                "accession": "GCF_004011835.1",
                "gtdb_species": "s__Rhodococcus sp004011835",
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                "matched_fragments": 1310,
                "total_fragments": 1311,
                "gtdb_taxonomy": "d__Bacteria;p__Actinobacteriota;c__Actinomycetia;o__Mycobacteriales;f__Mycobacteriaceae;g__Rhodococcus",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
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            },
            {
                "accession": "GCF_004011825.1",
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                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
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                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCF_004011865.1",
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                "ani": 83.6848,
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                "gtdb_taxonomy": "d__Bacteria;p__Actinobacteriota;c__Actinomycetia;o__Mycobacteriales;f__Mycobacteriaceae;g__Rhodococcus",
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                "mean_intra_species_ani": "N/A",
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                "num_clustered_genomes": 1,
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            },
            {
                "accession": "GCF_005484805.1",
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                "gtdb_taxonomy": "d__Bacteria;p__Actinobacteriota;c__Actinomycetia;o__Mycobacteriales;f__Mycobacteriaceae;g__Rhodococcus",
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            {
                "accession": "GCF_001646645.1",
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                "num_clustered_genomes": 1,
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        ]
    },
    "_bac2feature": {
        "phenotypes": null,
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    "_genome_taxon": [
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    "quality": 5,
    "quality_label": "\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f"
}