{ "type": "genome", "identifier": "GCF_004015185.1", "organism": "Clostridium manihotivorum", "title": "Clostridium manihotivorum", "description": "na", "data type": "Genome sequencing and assembly", "organization": "King Mongkut's University of Technology Thonburi", "publication": [ {} ], "properties": { "assembly_accession": "GCF_004015185.1", "bioproject": "PRJNA224116", "biosample": "SAMN08328878", "wgs_master": "na", "refseq_category": "reference genome", "taxid": "2320868", "species_taxid": "2320868", "organism_name": "Clostridium manihotivorum", "infraspecific_name": "strain=CT4", "isolate": "na", "version_status": "latest", "assembly_level": "Complete Genome", "release_type": "Major", "genome_rep": "Full", "seq_rel_date": "2019/01/14", "asm_name": "ASM401518v1", "asm_submitter": "King Mongkut's University of Technology Thonburi", "gbrs_paired_asm": "GCA_004015185.1", "paired_asm_comp": "identical", "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/004/015/185/GCF_004015185.1_ASM401518v1", "excluded_from_refseq": "na", "relation_to_type_material": "assembly from type material", "asm_not_live_date": "na ", "assembly_type": "haploid", "group": "bacteria", "genome_size": "6364326", "genome_size_ungapped": "6364326", "gc_percent": "32.000000", "replicon_count": "1", "scaffold_count": "1", "contig_count": "1", "annotation_provider": "NCBI RefSeq", "annotation_name": "GCF_004015185.1-RS_2024_03_28", "annotation_date": "2024-03-28", "total_gene_count": "5740", "protein_coding_gene_count": "5480", "non_coding_gene_count": "141", "pubmed_id": "33240652" }, "dbXrefs": [], "distribution": null, "Download": null, "status": "public", "visibility": null, "dateCreated": "2019-01-14", "dateModified": "2019-01-14", "datePublished": "2019-01-14", "_annotation": { "sample_count": 1, "sample_organism": [ "Clostridium manihotivorum" ], "sample_taxid": [ "2320868" ], "sample_host_organism": [], "sample_host_organism_id": [], "sample_host_disease": [], "sample_host_disease_id": [], "sample_host_location": [ "Thailand: Chonburi" ], "sample_host_location_id": [], "data_size": "1.745 MB", "sample_ph_range": { "min": null, "max": null }, "sample_temperature_range": { "min": 3540.0, "max": 3540.0 }, "completeness": 100.0, "contamination": 0.0, "strain_heterogeneity": 0.0, "genome_count": 1 }, "data_type": "G", "data_source": "RefSeq", "_dfast": { "Total Sequence Length (bp)": "6364326", "Number of Sequences": "1", "Longest Sequences (bp)": "6364326", "N50 (bp)": "6364326", "Gap Ratio (%)": "0.000000", "GCcontent (%)": "32.0", "Number of CDSs": "5757", "Average Protein Length": "294.7", "Coding Ratio (%)": "80.0", "Number of rRNAs": "28", "Number of tRNAs": "95", "Number of CRISPRs": "4" }, "has_analysis": true, "_dfastqc": { "tc_result": [ { "organism_name": "Clostridium manihotivorum", "strain": "strain=CT4", "accession": "GCA_004015185.1", "taxid": 2320868, "species_taxid": 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"ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Clostridium polyendosporum", "strain": "strain=JCM 30710", "accession": "GCA_018332455.1", "taxid": 69208, "species_taxid": 69208, "relation_to_type": "type", "validated": true, "ani": 77.5218, "matched_fragments": 235, "total_fragments": 2121, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Clostridium saccharobutylicum", "strain": "strain=DSM 13864", "accession": "GCA_000473995.1", "taxid": 169679, "species_taxid": 169679, "relation_to_type": "type", "validated": true, "ani": 77.4505, "matched_fragments": 234, "total_fragments": 2121, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Clostridium cavendishii", "strain": "strain=DSM 21758", "accession": "GCA_900141845.1", "taxid": 349931, "species_taxid": 349931, "relation_to_type": "type", "validated": true, "ani": 76.9899, "matched_fragments": 262, "total_fragments": 2121, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Clostridium tarantellae", "strain": "strain=DSM 3997", "accession": "GCA_009295725.1", "taxid": 39493, "species_taxid": 39493, "relation_to_type": "type", "validated": true, "ani": 76.808, "matched_fragments": 177, "total_fragments": 2121, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Clostridium saccharobutylicum", "strain": "strain=DSM 13864", "accession": "GCA_001657435.1", "taxid": 169679, "species_taxid": 169679, "relation_to_type": "type", "validated": true, "ani": 76.7881, "matched_fragments": 204, "total_fragments": 2121, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Clostridium gallinarum", "strain": "strain=Sa3CUN1", "accession": "GCA_014836325.1", "taxid": 2762246, "species_taxid": 2762246, "relation_to_type": "type", "validated": true, "ani": 76.7562, "matched_fragments": 168, "total_fragments": 2121, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": 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