{ "type": "genome", "identifier": "GCF_004015795.1", "organism": "Falsirhodobacter deserti", "title": "Falsirhodobacter deserti", "description": "na", "data type": "Genome sequencing and assembly", "organization": "BIOTECHNOLOGY RESEARCH INSTITUTE, CAAS", "publication": [ {} ], "properties": { "assembly_accession": "GCF_004015795.1", "bioproject": "PRJNA224116", "biosample": "SAMN02999969", "wgs_master": "JQHS00000000.1", "refseq_category": "reference genome", "taxid": "1365611", "species_taxid": "1365611", "organism_name": "Falsirhodobacter deserti", "infraspecific_name": "strain=W402", "isolate": "na", "version_status": "latest", "assembly_level": "Scaffold", "release_type": "Major", "genome_rep": "Full", "seq_rel_date": "2019/01/14", "asm_name": "ASM401579v1", "asm_submitter": "BIOTECHNOLOGY RESEARCH INSTITUTE, CAAS", "gbrs_paired_asm": "GCA_004015795.1", "paired_asm_comp": "identical", "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/004/015/795/GCF_004015795.1_ASM401579v1", "excluded_from_refseq": "na", "relation_to_type_material": "assembly from type material", "asm_not_live_date": "na ", "assembly_type": "haploid", "group": "bacteria", "genome_size": "2982257", "genome_size_ungapped": "2981177", "gc_percent": "63.500000", "replicon_count": "0", "scaffold_count": "7", "contig_count": "17", "annotation_provider": "NCBI RefSeq", "annotation_name": "GCF_004015795.1-RS_2024_04_03", "annotation_date": "2024-04-03", "total_gene_count": "2988", "protein_coding_gene_count": "2861", "non_coding_gene_count": "63", "pubmed_id": "na" }, "dbXrefs": [], "distribution": null, "Download": null, "status": "public", "visibility": null, "dateCreated": "2019-01-14", "dateModified": "2019-01-14", "datePublished": "2019-01-14", "_annotation": { "sample_count": 1, "sample_organism": [ "Falsirhodobacter deserti" ], "sample_taxid": [ "1365611" ], "sample_host_organism": [], "sample_host_organism_id": [], "sample_host_disease": [], "sample_host_disease_id": [], "sample_host_location": [ "China: Takla Makan desert" ], "sample_host_location_id": [], "data_size": "0.823 MB", "sample_ph_range": { "min": null, "max": null }, "sample_temperature_range": { "min": null, "max": null }, "completeness": 100.0, "contamination": 0.0, "strain_heterogeneity": 0.0, "genome_count": 1 }, "data_type": "G", "data_source": "RefSeq", "_dfast": { "Total Sequence Length (bp)": "2982257", "Number of Sequences": "7", "Longest Sequences (bp)": "2292967", "N50 (bp)": "2292967", "Gap Ratio (%)": "0.036214", "GCcontent (%)": "63.4", "Number of CDSs": "2944", "Average Protein Length": "306.3", "Coding Ratio (%)": "90.7", "Number of rRNAs": "9", "Number of tRNAs": "52", "Number of CRISPRs": "0" }, "has_analysis": true, "_dfastqc": { "tc_result": [ { "organism_name": "Cereibacter changlensis", "strain": "strain=JA139", "accession": "GCA_003034985.1", "taxid": 402884, "species_taxid": 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78.658, "matched_fragments": 336, "total_fragments": 991, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Rhodobacter amnigenus", "strain": "strain=HSP-20", "accession": "GCA_019130055.1", "taxid": 2852097, "species_taxid": 2852097, "relation_to_type": "type", "validated": true, "ani": 78.6516, "matched_fragments": 337, "total_fragments": 991, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Frigidibacter albus", "strain": "strain=CGMCC 1.13995", "accession": "GCA_014640395.1", "taxid": 1465486, "species_taxid": 1465486, "relation_to_type": "type", "validated": true, "ani": 78.6135, "matched_fragments": 341, "total_fragments": 991, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Frigidibacter albus", "strain": "strain=SP32", "accession": "GCA_010993795.1", "taxid": 1465486, "species_taxid": 1465486, "relation_to_type": "type", "validated": true, "ani": 78.5813, "matched_fragments": 338, "total_fragments": 991, 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"Cereibacter sediminicola", "strain": "strain=JA983", "accession": "GCA_007668225.1", "taxid": 2584941, "species_taxid": 2584941, "relation_to_type": "type", "validated": true, "ani": 78.5359, "matched_fragments": 333, "total_fragments": 991, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Frigidibacter mobilis", "strain": "strain=cai42", "accession": "GCA_001620265.1", "taxid": 1335048, "species_taxid": 1335048, "relation_to_type": "type", "validated": true, "ani": 78.467, "matched_fragments": 350, "total_fragments": 991, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Gemmobacter lanyuensis", "strain": "strain=KCTC 23714", "accession": "GCA_014652355.1", "taxid": 1054497, "species_taxid": 1054497, "relation_to_type": "type", "validated": true, "ani": 78.4062, "matched_fragments": 336, "total_fragments": 991, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Gemmobacter straminiformis", "strain": "strain=CAM-8", "accession": "GCA_014243445.1", "taxid": 2045119, "species_taxid": 2045119, "relation_to_type": "type", "validated": true, "ani": 78.3772, "matched_fragments": 320, "total_fragments": 991, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Gemmobacter serpentinus", "strain": "strain=HB-1", "accession": "GCA_008973825.1", "taxid": 2652247, "species_taxid": 2652247, "relation_to_type": "type", "validated": true, "ani": 78.3594, "matched_fragments": 301, "total_fragments": 991, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Cereibacter azotoformans", "strain": "strain=KA25", "accession": "GCA_003050905.1", "taxid": 43057, "species_taxid": 43057, "relation_to_type": "type", "validated": true, "ani": 78.3456, "matched_fragments": 355, "total_fragments": 991, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Paracoccus lichenicola", "strain": "strain=YIM 132242", "accession": "GCA_009708075.1", "taxid": 2665644, "species_taxid": 2665644, "relation_to_type": "type", "validated": true, "ani": 78.333, "matched_fragments": 312, "total_fragments": 991, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Paracoccus liaowanqingii", "strain": "strain=2251", "accession": "GCA_004683865.2", "taxid": 2560053, "species_taxid": 2560053, "relation_to_type": "type", "validated": true, "ani": 78.3301, "matched_fragments": 340, "total_fragments": 991, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Gemmobacter nectariphilus", "strain": "strain=DSM 15620", "accession": "GCA_000429765.1", "taxid": 220343, "species_taxid": 220343, "relation_to_type": "type", "validated": true, "ani": 78.3153, "matched_fragments": 322, "total_fragments": 991, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "[Luteovulum] sphaeroides subsp. megalophilum", "strain": "strain=DSM 18937", "accession": "GCA_900188265.1", "taxid": 418630, "species_taxid": 1063, 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