{ "type": "genome", "identifier": "GCF_004022265.1", "organism": "Sinirhodobacter ferrireducens", "title": "Sinirhodobacter ferrireducens", "description": "na", "data type": "Genome sequencing and assembly", "organization": "Research Institute of Forest Ecology Environment and Protection", "publication": [ {} ], "properties": { "assembly_accession": "GCF_004022265.1", "bioproject": "PRJNA224116", "biosample": "SAMN10690863", "wgs_master": "SAVB00000000.1", "refseq_category": "reference genome", "taxid": "1215032", "species_taxid": "1215032", "organism_name": "Sinirhodobacter ferrireducens", "infraspecific_name": "strain=CCTCC AB 2012026", "isolate": "na", "version_status": "latest", "assembly_level": "Contig", "release_type": "Major", "genome_rep": "Full", "seq_rel_date": "2019/01/14", "asm_name": "ASM402226v1", "asm_submitter": "Research Institute of Forest Ecology Environment and Protection", "gbrs_paired_asm": "GCA_004022265.1", "paired_asm_comp": "identical", "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/004/022/265/GCF_004022265.1_ASM402226v1", "excluded_from_refseq": "na", "relation_to_type_material": "assembly from type material", "asm_not_live_date": "na ", "assembly_type": "haploid", "group": "bacteria", "genome_size": "4066781", "genome_size_ungapped": "4066781", "gc_percent": "68.000000", "replicon_count": "0", "scaffold_count": "61", "contig_count": "61", "annotation_provider": "NCBI RefSeq", "annotation_name": "GCF_004022265.1-RS_2024_10_23", "annotation_date": "2024-10-23", "total_gene_count": "4010", "protein_coding_gene_count": "3879", "non_coding_gene_count": "56", "pubmed_id": "na" }, "dbXrefs": [], "distribution": null, "Download": null, "status": "public", "visibility": null, "dateCreated": "2019-01-14", "dateModified": "2019-01-14", "datePublished": "2019-01-14", "_annotation": { "sample_count": 1, "sample_organism": [ "Sinirhodobacter ferrireducens" ], "sample_taxid": [ "1215032" ], "sample_host_organism": [], "sample_host_organism_id": [], "sample_host_disease": [], "sample_host_disease_id": [], "sample_host_location": [ "China:Guangdong" ], "sample_host_location_id": [], "data_size": "1.103 MB", "sample_ph_range": { "min": null, "max": null }, "sample_temperature_range": { "min": null, "max": null }, "completeness": 100.0, "contamination": 0.0, "strain_heterogeneity": 0.0, "genome_count": 1 }, "data_type": "G", "data_source": "RefSeq", "_dfast": { "Total Sequence Length (bp)": "4066781", "Number of Sequences": "61", "Longest Sequences (bp)": "300985", "N50 (bp)": "157186", "Gap Ratio (%)": "0.000000", "GCcontent (%)": "67.8", "Number of CDSs": "3936", "Average Protein Length": "312.0", "Coding Ratio (%)": "90.6", "Number of rRNAs": "3", "Number of tRNAs": "53", "Number of CRISPRs": "1" }, "has_analysis": true, "_dfastqc": { "tc_result": [ { "organism_name": "Sinirhodobacter ferrireducens", "strain": "strain=CCTCC AB2012026", "accession": "GCA_004022265.1", "taxid": 1215032, 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"below_threshold" }, { "organism_name": "Cereibacter ovatus", "strain": "strain=JA234", "accession": "GCA_900207575.1", "taxid": 439529, "species_taxid": 439529, "relation_to_type": "type", "validated": true, "ani": 78.9676, "matched_fragments": 485, "total_fragments": 1327, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Paracoccus shandongensis", "strain": "strain=wg2", "accession": "GCA_017315735.1", "taxid": 2816048, "species_taxid": 2816048, "relation_to_type": "type", "validated": true, "ani": 78.5684, "matched_fragments": 438, "total_fragments": 1327, "ani_threshold": 95, "status": "below_threshold" } ], "cc_result": { "completeness": 100.0, "contamination": 0.0, "strain_heterogeneity": 0.0 }, "gtdb_result": [ { "accession": "GCF_004022265.1", "gtdb_species": "s__Paenirhodobacter ferrireducens", "ani": 100.0, "matched_fragments": 1323, "total_fragments": 1327, "gtdb_taxonomy": 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"vibrio_cell_shape": null, "spiral_cell_shape": null }, "_genome_taxon": [ "Sinirhodobacter", "ferrireducens" ], "quality": 4, "quality_label": "\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f" }