{ "type": "genome", "identifier": "GCF_004054195.1", "organism": "Mucilaginibacter gilvus", "title": "Mucilaginibacter gilvus", "description": "na", "data type": "Genome sequencing and assembly", "organization": "Shandong university at Weihai", "publication": [ {} ], "properties": { "assembly_accession": "GCF_004054195.1", "bioproject": "PRJNA224116", "biosample": "SAMN10721483", "wgs_master": "SBIW00000000.1", "refseq_category": "reference genome", "taxid": "2305909", "species_taxid": "2305909", "organism_name": "Mucilaginibacter gilvus", "infraspecific_name": "strain=F01003", "isolate": "na", "version_status": "latest", "assembly_level": "Contig", "release_type": "Major", "genome_rep": "Full", "seq_rel_date": "2019/01/19", "asm_name": "ASM405419v1", "asm_submitter": "Shandong university at Weihai", "gbrs_paired_asm": "GCA_004054195.1", "paired_asm_comp": "identical", "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/004/054/195/GCF_004054195.1_ASM405419v1", "excluded_from_refseq": "na", "relation_to_type_material": "assembly from type material", "asm_not_live_date": "na ", "assembly_type": "haploid", "group": "bacteria", "genome_size": "5418978", "genome_size_ungapped": "5418978", "gc_percent": "45.000000", "replicon_count": "0", "scaffold_count": "31", "contig_count": "31", "annotation_provider": "NCBI RefSeq", "annotation_name": "GCF_004054195.1-RS_2024_10_23", "annotation_date": "2024-10-23", "total_gene_count": "4845", "protein_coding_gene_count": "4764", "non_coding_gene_count": "54", "pubmed_id": "na" }, "dbXrefs": [], "distribution": null, "Download": null, "status": "public", "visibility": null, "dateCreated": "2019-01-19", "dateModified": "2019-01-19", "datePublished": "2019-01-19", "_annotation": { "sample_count": 1, "sample_organism": [ "Mucilaginibacter gilvus" ], "sample_taxid": [ "2305909" ], "sample_host_organism": [], "sample_host_organism_id": [], "sample_host_disease": [], "sample_host_disease_id": [], "sample_host_location": [ "Antarctica" ], "sample_host_location_id": [], "data_size": "1.537 MB", "sample_ph_range": { "min": null, "max": null }, "sample_temperature_range": { "min": null, "max": null }, "completeness": 100.0, "contamination": 0.0, "strain_heterogeneity": 0.0, "genome_count": 1 }, "data_type": "G", "data_source": "RefSeq", "_dfast": { "Total Sequence Length (bp)": "5418978", "Number of Sequences": "31", "Longest Sequences (bp)": "932502", "N50 (bp)": "548097", "Gap Ratio (%)": "0.000037", "GCcontent (%)": "44.8", "Number of CDSs": "4709", "Average Protein Length": "334.8", "Coding Ratio (%)": "87.3", "Number of rRNAs": "6", "Number of tRNAs": "44", "Number of CRISPRs": "0" }, "has_analysis": true, "_dfastqc": { "tc_result": [ { "organism_name": "Mucilaginibacter gilvus", "strain": "strain=F01003", "accession": "GCA_004054195.1", "taxid": 2305909, "species_taxid": 2305909, "relation_to_type": "type", "validated": true, "ani": 100.0, "matched_fragments": 1793, "total_fragments": 1793, "ani_threshold": 95, "status": "conclusive" }, { "organism_name": "Mucilaginibacter pankratovii", "strain": "strain=ZT4R22", "accession": "GCA_014773265.1", "taxid": 2772110, "species_taxid": 2772110, "relation_to_type": "type", "validated": true, "ani": 85.823, "matched_fragments": 1392, "total_fragments": 1793, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Mucilaginibacter psychrotolerans", "strain": "strain=NH7-4", "accession": "GCA_004519315.1", "taxid": 1524096, "species_taxid": 1524096, "relation_to_type": "type", "validated": true, "ani": 80.5419, "matched_fragments": 954, "total_fragments": 1793, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Mucilaginibacter pedocola", "strain": "strain=TBZ30", "accession": "GCA_002013915.1", "taxid": 1792845, "species_taxid": 1792845, "relation_to_type": "type", "validated": true, "ani": 80.269, "matched_fragments": 976, "total_fragments": 1793, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Mucilaginibacter terrigena", "strain": "strain=17JY9-4", "accession": "GCA_004168255.1", "taxid": 2492395, "species_taxid": 2492395, "relation_to_type": "type", "validated": true, "ani": 79.4099, "matched_fragments": 676, "total_fragments": 1793, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Mucilaginibacter phyllosphaerae", "strain": "strain=PP-F2FG21", "accession": "GCA_004378255.1", "taxid": 1812349, "species_taxid": 1812349, "relation_to_type": "type", "validated": true, "ani": 79.0855, "matched_fragments": 620, "total_fragments": 1793, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Mucilaginibacter pallidiroseus", "strain": "strain=dk17", "accession": "GCA_007846085.1", "taxid": 2599295, "species_taxid": 2599295, "relation_to_type": "type", "validated": true, "ani": 78.2673, "matched_fragments": 377, "total_fragments": 1793, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Mucilaginibacter achroorhodeus", "strain": "strain=MJ1a", "accession": "GCA_007846095.1", "taxid": 2599294, "species_taxid": 2599294, "relation_to_type": "type", "validated": true, "ani": 78.1394, "matched_fragments": 382, "total_fragments": 1793, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Mucilaginibacter segetis", "strain": "strain=SD-g", "accession": "GCA_016522075.1", "taxid": 2793071, "species_taxid": 2793071, "relation_to_type": "type", "validated": true, "ani": 78.0882, "matched_fragments": 344, "total_fragments": 1793, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Mucilaginibacter pineti", "strain": "strain=47C3B", "accession": "GCA_900101875.1", "taxid": 1391627, "species_taxid": 1391627, "relation_to_type": "type", "validated": true, "ani": 77.9868, "matched_fragments": 449, "total_fragments": 1793, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Mucilaginibacter agri", "strain": "strain=R11", "accession": "GCA_009928685.1", "taxid": 2695265, "species_taxid": 2695265, "relation_to_type": "type", "validated": true, "ani": 77.2444, "matched_fragments": 252, "total_fragments": 1793, "ani_threshold": 95, "status": "below_threshold" } ], "cc_result": { "completeness": 100.0, "contamination": 0.0, "strain_heterogeneity": 0.0 }, "gtdb_result": [ { "accession": "GCF_004054195.1", "gtdb_species": "s__Mucilaginibacter sp004054195", "ani": 100.0, "matched_fragments": 1793, "total_fragments": 1793, "gtdb_taxonomy": "d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Sphingobacteriales;f__Sphingobacteriaceae;g__Mucilaginibacter", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "conclusive" }, { "accession": "GCF_014773265.1", "gtdb_species": "s__Mucilaginibacter pankratovii", "ani": 85.8292, "matched_fragments": 1391, "total_fragments": 1793, "gtdb_taxonomy": "d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Sphingobacteriales;f__Sphingobacteriaceae;g__Mucilaginibacter", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCF_004519315.1", "gtdb_species": "s__Mucilaginibacter psychrotolerans", "ani": 80.5524, "matched_fragments": 952, "total_fragments": 1793, "gtdb_taxonomy": "d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Sphingobacteriales;f__Sphingobacteriaceae;g__Mucilaginibacter", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCF_002013915.1", "gtdb_species": "s__Mucilaginibacter pedocola", "ani": 80.2513, "matched_fragments": 976, "total_fragments": 1793, "gtdb_taxonomy": "d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Sphingobacteriales;f__Sphingobacteriaceae;g__Mucilaginibacter", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCF_004168255.1", "gtdb_species": "s__Mucilaginibacter terrigena", "ani": 79.3998, "matched_fragments": 677, "total_fragments": 1793, "gtdb_taxonomy": "d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Sphingobacteriales;f__Sphingobacteriaceae;g__Mucilaginibacter", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCF_001636615.1", "gtdb_species": "s__Mucilaginibacter sp001636615", "ani": 79.3652, "matched_fragments": 662, "total_fragments": 1793, "gtdb_taxonomy": 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"d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Sphingobacteriales;f__Sphingobacteriaceae;g__Mucilaginibacter", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCF_016522075.1", "gtdb_species": "s__Mucilaginibacter segetis", "ani": 78.0882, "matched_fragments": 344, "total_fragments": 1793, "gtdb_taxonomy": "d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Sphingobacteriales;f__Sphingobacteriaceae;g__Mucilaginibacter", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCF_002355435.1", "gtdb_species": "s__Mucilaginibacter gotjawali", "ani": 77.4769, "matched_fragments": 321, "total_fragments": 1793, "gtdb_taxonomy": "d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Sphingobacteriales;f__Sphingobacteriaceae;g__Mucilaginibacter", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "99.99", "min_intra_species_ani": "99.99", "mean_intra_species_af": "1.00", "min_intra_species_af": "1.00", "num_clustered_genomes": 2, "status": "-" } ] }, "_bac2feature": { "phenotypes": null, "cell_diameter": -0.382, "cell_length": 0.217, "doubling_h": null, "growth_tmp": 25.111, "optimum_tmp": 26.0, "optimum_ph": 6.449, "genome_size": 6405217.25, "gc_content": 43.045, "coding_genes": 5407.0, "rRNA16S_genes": 2.0, "tRNA_genes": 47.0, "gram_stain": 0.0, "sporulation": 0.0, "motility": 0.0, "range_salinity": null, "facultative_respiration": 0.269, "anaerobic_respiration": 0.0, "aerobic_respiration": 0.73, "mesophilic_range_tmp": 1.0, "thermophilic_range_tmp": 0.0, "psychrophilic_range_tmp": 0.0, "bacillus_cell_shape": 1.0, "coccus_cell_shape": 0.0, "filament_cell_shape": 0.0, "coccobacillus_cell_shape": 0.0, "vibrio_cell_shape": 0.0, "spiral_cell_shape": 0.0 }, "_genome_taxon": [ "Mucilaginibacter", "gilvus" ], "quality": 4, "quality_label": "\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f" }