{
    "type": "genome",
    "identifier": "GCF_004102725.1",
    "organism": "Methanoculleus taiwanensis",
    "title": "Methanoculleus taiwanensis",
    "description": "na",
    "data type": "Genome sequencing and assembly",
    "organization": "National Chung Hsing University",
    "publication": [
        {}
    ],
    "properties": {
        "assembly_accession": "GCF_004102725.1",
        "bioproject": "PRJNA224116",
        "biosample": "SAMN03856099",
        "wgs_master": "LHQS00000000.1",
        "refseq_category": "reference genome",
        "taxid": "1550565",
        "species_taxid": "1550565",
        "organism_name": "Methanoculleus taiwanensis",
        "infraspecific_name": "strain=CYW4",
        "isolate": "na",
        "version_status": "latest",
        "assembly_level": "Scaffold",
        "release_type": "Major",
        "genome_rep": "Full",
        "seq_rel_date": "2019/01/22",
        "asm_name": "ASM410272v1",
        "asm_submitter": "National Chung Hsing University",
        "gbrs_paired_asm": "GCA_004102725.1",
        "paired_asm_comp": "identical",
        "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/004/102/725/GCF_004102725.1_ASM410272v1",
        "excluded_from_refseq": "na",
        "relation_to_type_material": "assembly from type material",
        "asm_not_live_date": "na        ",
        "assembly_type": "haploid",
        "group": "archaea",
        "genome_size": "2750720",
        "genome_size_ungapped": "2750372",
        "gc_percent": "60.000000",
        "replicon_count": "0",
        "scaffold_count": "12",
        "contig_count": "12",
        "annotation_provider": "NCBI RefSeq",
        "annotation_name": "GCF_004102725.1-RS_2024_10_23",
        "annotation_date": "2024-10-23",
        "total_gene_count": "2745",
        "protein_coding_gene_count": "2680",
        "non_coding_gene_count": "57",
        "pubmed_id": "25575827"
    },
    "dbXrefs": [],
    "distribution": null,
    "Download": null,
    "status": "public",
    "visibility": null,
    "dateCreated": "2019-01-22",
    "dateModified": "2019-01-22",
    "datePublished": "2019-01-22",
    "_annotation": {
        "sample_count": 1,
        "sample_organism": [
            "Methanoculleus taiwanensis"
        ],
        "sample_taxid": [
            "1550565"
        ],
        "sample_host_organism": [],
        "sample_host_organism_id": [],
        "sample_host_disease": [],
        "sample_host_disease_id": [],
        "sample_host_location": [
            "Taiwan"
        ],
        "sample_host_location_id": [],
        "data_size": "0.771 MB",
        "sample_ph_range": {
            "min": null,
            "max": null
        },
        "sample_temperature_range": {
            "min": null,
            "max": null
        },
        "completeness": 95.83,
        "contamination": 4.17,
        "strain_heterogeneity": 0.0,
        "genome_count": 1
    },
    "data_type": "G",
    "data_source": "RefSeq",
    "_dfast": {
        "Total Sequence Length (bp)": "2750720",
        "Number of Sequences": "12",
        "Longest Sequences (bp)": "1210448",
        "N50 (bp)": "939805",
        "Gap Ratio (%)": "0.012651",
        "GCcontent (%)": "60.0",
        "Number of CDSs": "2710",
        "Average Protein Length": "297.2",
        "Coding Ratio (%)": "87.8",
        "Number of rRNAs": "5",
        "Number of tRNAs": "48",
        "Number of CRISPRs": "0"
    },
    "has_analysis": true,
    "_dfastqc": {
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                "organism_name": "Methanoculleus taiwanensis",
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                "accession": "GCA_004102725.1",
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                "species_taxid": 1550565,
                "relation_to_type": "type",
                "validated": true,
                "ani": 100.0,
                "matched_fragments": 912,
                "total_fragments": 912,
                "ani_threshold": 95,
                "status": "conclusive"
            },
            {
                "organism_name": "Methanoculleus sediminis",
                "strain": "strain=S3Fa",
                "accession": "GCA_001017125.1",
                "taxid": 1550566,
                "species_taxid": 1550566,
                "relation_to_type": "type",
                "validated": true,
                "ani": 78.7659,
                "matched_fragments": 352,
                "total_fragments": 912,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Methanoculleus horonobensis",
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                "accession": "GCA_001602375.1",
                "taxid": 528314,
                "species_taxid": 528314,
                "relation_to_type": "type",
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                "ani": 78.6564,
                "matched_fragments": 348,
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                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Methanoculleus marisnigri",
                "strain": "strain=JR1",
                "accession": "GCA_000015825.1",
                "taxid": 2198,
                "species_taxid": 2198,
                "relation_to_type": "type",
                "validated": true,
                "ani": 78.5884,
                "matched_fragments": 326,
                "total_fragments": 912,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Methanoculleus bourgensis",
                "strain": "strain=MS2T",
                "accession": "GCA_000304355.2",
                "taxid": 83986,
                "species_taxid": 83986,
                "relation_to_type": "type",
                "validated": true,
                "ani": 78.3333,
                "matched_fragments": 280,
                "total_fragments": 912,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Methanoculleus thermophilus",
                "strain": "strain=CR-1",
                "accession": "GCA_001571405.1",
                "taxid": 2200,
                "species_taxid": 2200,
                "relation_to_type": "type",
                "validated": true,
                "ani": 77.6931,
                "matched_fragments": 252,
                "total_fragments": 912,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Methanoculleus thermophilus",
                "strain": "strain=DSM 2373",
                "accession": "GCA_900101055.1",
                "taxid": 2200,
                "species_taxid": 2200,
                "relation_to_type": "type",
                "validated": true,
                "ani": 77.647,
                "matched_fragments": 249,
                "total_fragments": 912,
                "ani_threshold": 95,
                "status": "below_threshold"
            }
        ],
        "cc_result": {
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            "contamination": 4.17,
            "strain_heterogeneity": 0.0
        },
        "gtdb_result": [
            {
                "accession": "GCF_004102725.1",
                "gtdb_species": "s__Methanoculleus_A taiwanensis",
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                "total_fragments": 912,
                "gtdb_taxonomy": "d__Archaea;p__Halobacteriota;c__Methanomicrobia;o__Methanomicrobiales;f__Methanoculleaceae;g__Methanoculleus_A",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "conclusive"
            },
            {
                "accession": "GCA_016841385.1",
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                "matched_fragments": 265,
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                "gtdb_taxonomy": "d__Archaea;p__Halobacteriota;c__Methanomicrobia;o__Methanomicrobiales;f__Methanoculleaceae;g__Methanoculleus",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCA_002498065.1",
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                "matched_fragments": 300,
                "total_fragments": 912,
                "gtdb_taxonomy": "d__Archaea;p__Halobacteriota;c__Methanomicrobia;o__Methanomicrobiales;f__Methanoculleaceae;g__Methanoculleus",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCF_001602375.1",
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                "gtdb_taxonomy": "d__Archaea;p__Halobacteriota;c__Methanomicrobia;o__Methanomicrobiales;f__Methanoculleaceae;g__Methanoculleus",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
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                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCA_002503885.1",
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                "gtdb_taxonomy": "d__Archaea;p__Halobacteriota;c__Methanomicrobia;o__Methanomicrobiales;f__Methanoculleaceae;g__Methanoculleus",
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                "status": "-"
            },
            {
                "accession": "GCA_002499455.1",
                "gtdb_species": "s__Methanoculleus sp002499455",
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                "matched_fragments": 283,
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                "gtdb_taxonomy": "d__Archaea;p__Halobacteriota;c__Methanomicrobia;o__Methanomicrobiales;f__Methanoculleaceae;g__Methanoculleus",
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                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
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                "status": "-"
            },
            {
                "accession": "GCA_002839645.1",
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                "gtdb_taxonomy": "d__Archaea;p__Halobacteriota;c__Methanomicrobia;o__Methanomicrobiales;f__Methanoculleaceae;g__Methanoculleus",
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                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
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                "num_clustered_genomes": 1,
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            },
            {
                "accession": "GCA_001896715.1",
                "gtdb_species": "s__Methanoculleus sp001896715",
                "ani": 78.2553,
                "matched_fragments": 188,
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                "gtdb_taxonomy": "d__Archaea;p__Halobacteriota;c__Methanomicrobia;o__Methanomicrobiales;f__Methanoculleaceae;g__Methanoculleus",
                "ani_circumscription_radius": 95.0,
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                "num_clustered_genomes": 3,
                "status": "-"
            }
        ]
    },
    "_bac2feature": {
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        "cell_length": -0.042,
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        "growth_tmp": 40.952,
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        "gc_content": 60.765,
        "coding_genes": 2468.875,
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        "tRNA_genes": 48.166,
        "gram_stain": 0.0,
        "sporulation": 0.0,
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        "aerobic_respiration": 0.0,
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        "bacillus_cell_shape": 0.0,
        "coccus_cell_shape": 1.0,
        "filament_cell_shape": 0.0,
        "coccobacillus_cell_shape": 0.0,
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    "_genome_taxon": [
        "Methanoculleus",
        "taiwanensis"
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    "quality": 5,
    "quality_label": "\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f"
}