{
    "type": "genome",
    "identifier": "GCF_004104055.1",
    "organism": "Leeuwenhoekiella aestuarii",
    "title": "Leeuwenhoekiella aestuarii",
    "description": "na",
    "data type": "Genome sequencing and assembly",
    "organization": "Ghent University",
    "publication": [
        {}
    ],
    "properties": {
        "assembly_accession": "GCF_004104055.1",
        "bioproject": "PRJNA224116",
        "biosample": "SAMN09487585",
        "wgs_master": "QOVJ00000000.1",
        "refseq_category": "reference genome",
        "taxid": "2249426",
        "species_taxid": "2249426",
        "organism_name": "Leeuwenhoekiella aestuarii",
        "infraspecific_name": "strain=R-48165",
        "isolate": "na",
        "version_status": "latest",
        "assembly_level": "Contig",
        "release_type": "Major",
        "genome_rep": "Full",
        "seq_rel_date": "2019/01/23",
        "asm_name": "ASM410405v1",
        "asm_submitter": "Ghent University",
        "gbrs_paired_asm": "GCA_004104055.1",
        "paired_asm_comp": "identical",
        "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/004/104/055/GCF_004104055.1_ASM410405v1",
        "excluded_from_refseq": "na",
        "relation_to_type_material": "assembly from type material",
        "asm_not_live_date": "na        ",
        "assembly_type": "haploid",
        "group": "bacteria",
        "genome_size": "4430130",
        "genome_size_ungapped": "4430130",
        "gc_percent": "38.000000",
        "replicon_count": "0",
        "scaffold_count": "30",
        "contig_count": "30",
        "annotation_provider": "NCBI RefSeq",
        "annotation_name": "GCF_004104055.1-RS_2024_03_28",
        "annotation_date": "2024-03-28",
        "total_gene_count": "3798",
        "protein_coding_gene_count": "3732",
        "non_coding_gene_count": "43",
        "pubmed_id": "na"
    },
    "dbXrefs": [],
    "distribution": null,
    "Download": null,
    "status": "public",
    "visibility": null,
    "dateCreated": "2019-01-23",
    "dateModified": "2019-01-23",
    "datePublished": "2019-01-23",
    "_annotation": {
        "sample_count": 1,
        "sample_organism": [
            "Leeuwenhoekiella aestuarii"
        ],
        "sample_taxid": [
            "2249426"
        ],
        "sample_host_organism": [],
        "sample_host_organism_id": [],
        "sample_host_disease": [],
        "sample_host_disease_id": [],
        "sample_host_location": [
            "Netherlands: Paulina salt marsh"
        ],
        "sample_host_location_id": [],
        "data_size": "1.253 MB",
        "sample_ph_range": {
            "min": null,
            "max": null
        },
        "sample_temperature_range": {
            "min": null,
            "max": null
        },
        "completeness": 100.0,
        "contamination": 0.0,
        "strain_heterogeneity": 0.0,
        "genome_count": 1
    },
    "data_type": "G",
    "data_source": "RefSeq",
    "_dfast": {
        "Total Sequence Length (bp)": "4430130",
        "Number of Sequences": "30",
        "Longest Sequences (bp)": "1376305",
        "N50 (bp)": "637981",
        "Gap Ratio (%)": "0.000000",
        "GCcontent (%)": "37.8",
        "Number of CDSs": "3729",
        "Average Protein Length": "350.2",
        "Coding Ratio (%)": "88.4",
        "Number of rRNAs": "3",
        "Number of tRNAs": "38",
        "Number of CRISPRs": "0"
    },
    "has_analysis": true,
    "_dfastqc": {
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                "organism_name": "Leeuwenhoekiella aestuarii",
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                "relation_to_type": "type",
                "validated": true,
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                "total_fragments": 1460,
                "ani_threshold": 95,
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            },
            {
                "organism_name": "Leeuwenhoekiella marinoflava",
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                "accession": "GCA_900129005.1",
                "taxid": 988,
                "species_taxid": 988,
                "relation_to_type": "type",
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                "ani": 86.3726,
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                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Leeuwenhoekiella marinoflava",
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                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Leeuwenhoekiella blandensis",
                "strain": "strain=MED217",
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                "taxid": 360293,
                "species_taxid": 360293,
                "relation_to_type": "type",
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                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Leeuwenhoekiella palythoae",
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                "species_taxid": 573501,
                "relation_to_type": "type",
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                "ani": 79.8911,
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                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Leeuwenhoekiella palythoae",
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                "accession": "GCA_900130045.1",
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                "ani": 79.8578,
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                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Leeuwenhoekiella aequorea",
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                "accession": "GCA_004104375.1",
                "taxid": 283736,
                "species_taxid": 283736,
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                "validated": true,
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                "matched_fragments": 441,
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                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Gramella lutea",
                "strain": "strain=YJ019",
                "accession": "GCA_022489035.1",
                "taxid": 1607951,
                "species_taxid": 1607951,
                "relation_to_type": "type",
                "validated": true,
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                "matched_fragments": 64,
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                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Polaribacter undariae",
                "strain": "strain=KCTC 42175",
                "accession": "GCA_024918935.1",
                "taxid": 1574269,
                "species_taxid": 1574269,
                "relation_to_type": "type",
                "validated": true,
                "ani": 76.1108,
                "matched_fragments": 77,
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                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Abyssalbus ytuae",
                "strain": "strain=MT3330",
                "accession": "GCA_022807975.1",
                "taxid": 2926907,
                "species_taxid": 2926907,
                "relation_to_type": "type",
                "validated": true,
                "ani": 75.9805,
                "matched_fragments": 71,
                "total_fragments": 1460,
                "ani_threshold": 95,
                "status": "below_threshold"
            }
        ],
        "cc_result": {
            "completeness": 100.0,
            "contamination": 0.0,
            "strain_heterogeneity": 0.0
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        "gtdb_result": [
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                "accession": "GCF_004104055.1",
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                "matched_fragments": 1458,
                "total_fragments": 1460,
                "gtdb_taxonomy": "d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Flavobacteriales;f__Flavobacteriaceae;g__Leeuwenhoekiella",
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                "mean_intra_species_ani": "99.75",
                "min_intra_species_ani": "99.75",
                "mean_intra_species_af": "0.97",
                "min_intra_species_af": "0.97",
                "num_clustered_genomes": 2,
                "status": "conclusive"
            },
            {
                "accession": "GCF_004104075.1",
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                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
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                "mean_intra_species_ani": "N/A",
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                "num_clustered_genomes": 1,
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        ]
    },
    "_bac2feature": {
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        "cell_diameter": -0.317,
        "cell_length": 0.256,
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        "mesophilic_range_tmp": null,
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    "_genome_taxon": [
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    "quality": 4,
    "quality_label": "\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f"
}