{ "type": "genome", "identifier": "GCF_004104375.1", "organism": "Leeuwenhoekiella aequorea", "title": "Leeuwenhoekiella aequorea", "description": "na", "data type": "Genome sequencing and assembly", "organization": "Ghent University", "publication": [ {} ], "properties": { "assembly_accession": "GCF_004104375.1", "bioproject": "PRJNA224116", "biosample": "SAMN09487582", "wgs_master": "QOVM00000000.1", "refseq_category": "reference genome", "taxid": "283736", "species_taxid": "283736", "organism_name": "Leeuwenhoekiella aequorea", "infraspecific_name": "strain=LMG 22550", "isolate": "na", "version_status": "latest", "assembly_level": "Contig", "release_type": "Major", "genome_rep": "Full", "seq_rel_date": "2019/01/23", "asm_name": "ASM410437v1", "asm_submitter": "Ghent University", "gbrs_paired_asm": "GCA_004104375.1", "paired_asm_comp": "identical", "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/004/104/375/GCF_004104375.1_ASM410437v1", "excluded_from_refseq": "na", "relation_to_type_material": "assembly from type material", "asm_not_live_date": "na ", "assembly_type": "haploid", "group": "bacteria", "genome_size": "3458071", "genome_size_ungapped": "3458071", "gc_percent": "35.500000", "replicon_count": "0", "scaffold_count": "18", "contig_count": "18", "annotation_provider": "NCBI RefSeq", "annotation_name": "GCF_004104375.1-RS_2024_10_23", "annotation_date": "2024-10-23", "total_gene_count": "3120", "protein_coding_gene_count": "3056", "non_coding_gene_count": "45", "pubmed_id": "na" }, "dbXrefs": [], "distribution": null, "Download": null, "status": "public", "visibility": null, "dateCreated": "2019-01-23", "dateModified": "2019-01-23", "datePublished": "2019-01-23", "_annotation": { "sample_count": 1, "sample_organism": [ "Leeuwenhoekiella aequorea" ], "sample_taxid": [ "283736" ], "sample_host_organism": [], "sample_host_organism_id": [], "sample_host_disease": [], "sample_host_disease_id": [], "sample_host_location": [ "Antarctica" ], "sample_host_location_id": [], "data_size": "0.974 MB", "sample_ph_range": { "min": null, "max": null }, "sample_temperature_range": { "min": null, "max": null }, "completeness": 100.0, "contamination": 0.0, "strain_heterogeneity": 0.0, "genome_count": 1 }, "data_type": "G", "data_source": "RefSeq", "_dfast": { "Total Sequence Length (bp)": "3458071", "Number of Sequences": "18", "Longest Sequences (bp)": "872414", "N50 (bp)": "501718", "Gap Ratio (%)": "0.000000", "GCcontent (%)": "35.4", "Number of CDSs": "3050", "Average Protein Length": "340.1", "Coding Ratio (%)": "90.0", "Number of rRNAs": "3", "Number of tRNAs": "38", "Number of CRISPRs": "0" }, "has_analysis": true, "_dfastqc": { "tc_result": [ { "organism_name": "Leeuwenhoekiella aequorea", "strain": "strain=LMG 22550", "accession": "GCA_004104375.1", "taxid": 283736, "species_taxid": 283736, "relation_to_type": "type", "validated": true, "ani": 100.0, "matched_fragments": 1143, "total_fragments": 1144, "ani_threshold": 95, "status": "conclusive" }, { "organism_name": "Leeuwenhoekiella marinoflava", "strain": "strain=LMG 1345", "accession": "GCA_004104035.1", "taxid": 988, "species_taxid": 988, "relation_to_type": "type", "validated": true, "ani": 79.9225, "matched_fragments": 502, "total_fragments": 1144, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Leeuwenhoekiella marinoflava", "strain": "strain=DSM 3653", "accession": "GCA_900129005.1", "taxid": 988, "species_taxid": 988, "relation_to_type": "type", "validated": true, "ani": 79.7546, "matched_fragments": 502, "total_fragments": 1144, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Leeuwenhoekiella aestuarii", "strain": "strain=R-48165", "accession": "GCA_004104055.1", "taxid": 2249426, "species_taxid": 2249426, "relation_to_type": "type", "validated": true, "ani": 78.7721, "matched_fragments": 445, "total_fragments": 1144, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Leeuwenhoekiella blandensis", "strain": "strain=MED217", "accession": "GCA_000152985.1", "taxid": 360293, "species_taxid": 360293, "relation_to_type": "type", "validated": true, "ani": 78.4707, "matched_fragments": 393, "total_fragments": 1144, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Leeuwenhoekiella palythoae", "strain": "strain=DSM 19859", "accession": "GCA_900130045.1", "taxid": 573501, "species_taxid": 573501, "relation_to_type": "type", "validated": true, "ani": 78.3326, "matched_fragments": 371, "total_fragments": 1144, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Leeuwenhoekiella palythoae", "strain": "strain=LMG 24856", "accession": "GCA_004104045.1", "taxid": 573501, "species_taxid": 573501, "relation_to_type": "type", "validated": true, "ani": 78.1813, "matched_fragments": 365, "total_fragments": 1144, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Winogradskyella sediminis", "strain": "strain=DSM 28134", "accession": "GCA_003387355.1", "taxid": 1382466, "species_taxid": 1382466, "relation_to_type": "type", "validated": true, "ani": 76.8842, "matched_fragments": 91, "total_fragments": 1144, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Mesoflavibacter zeaxanthinifaciens subsp. sabulilitoris", "strain": "strain=KCTC 42117", "accession": "GCA_003008435.1", "taxid": 1520893, "species_taxid": 393060, "relation_to_type": "type", "validated": true, "ani": 76.8665, "matched_fragments": 91, "total_fragments": 1144, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Mesoflavibacter zeaxanthinifaciens subsp. sabulilitoris", "strain": "strain=CECT 8597", "accession": "GCA_014191595.1", "taxid": 1520893, "species_taxid": 393060, "relation_to_type": "type", "validated": true, "ani": 76.7111, "matched_fragments": 91, "total_fragments": 1144, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Algibacter 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