{ "type": "genome", "identifier": "GCF_004114535.1", "organism": "Bradyrhizobium nanningense", "title": "Bradyrhizobium nanningense", "description": "na", "data type": "Genome sequencing and assembly", "organization": "China Agricultural University", "publication": [ {} ], "properties": { "assembly_accession": "GCF_004114535.1", "bioproject": "PRJNA224116", "biosample": "SAMN03459137", "wgs_master": "LBJC00000000.1", "refseq_category": "reference genome", "taxid": "1325118", "species_taxid": "1325118", "organism_name": "Bradyrhizobium nanningense", "infraspecific_name": "strain=CCBAU 53390", "isolate": "na", "version_status": "latest", "assembly_level": "Scaffold", "release_type": "Major", "genome_rep": "Full", "seq_rel_date": "2019/01/25", "asm_name": "ASM411453v1", "asm_submitter": "China Agricultural University", "gbrs_paired_asm": "GCA_004114535.1", "paired_asm_comp": "identical", "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/004/114/535/GCF_004114535.1_ASM411453v1", "excluded_from_refseq": "na", "relation_to_type_material": "assembly from type material", "asm_not_live_date": "na ", "assembly_type": "haploid", "group": "bacteria", "genome_size": "8290088", "genome_size_ungapped": "8290003", "gc_percent": "63.500000", "replicon_count": "0", "scaffold_count": "82", "contig_count": "82", "annotation_provider": "NCBI RefSeq", "annotation_name": "GCF_004114535.1-RS_2024_05_26", "annotation_date": "2024-05-26", "total_gene_count": "7790", "protein_coding_gene_count": "7548", "non_coding_gene_count": "58", "pubmed_id": "na" }, "dbXrefs": [], "distribution": null, "Download": null, "status": "public", "visibility": null, "dateCreated": "2019-01-25", "dateModified": "2019-01-25", "datePublished": "2019-01-25", "_annotation": { "sample_count": 1, "sample_organism": [ "Bradyrhizobium nanningense" ], "sample_taxid": [ "1325118" ], "sample_host_organism": [ "Arachis hypogaea" ], "sample_host_organism_id": [], "sample_host_disease": [], "sample_host_disease_id": 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"status": "below_threshold" }, { "organism_name": "Bradyrhizobium stylosanthis", "strain": "strain=BR 446", "accession": "GCA_001641335.1", "taxid": 1803665, "species_taxid": 1803665, "relation_to_type": "type", "validated": true, "ani": 88.8022, "matched_fragments": 1886, "total_fragments": 2731, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Bradyrhizobium agreste", "strain": "strain=CNPSo 4010", "accession": "GCA_016031625.1", "taxid": 2751811, "species_taxid": 2751811, "relation_to_type": "type", "validated": true, "ani": 88.8006, "matched_fragments": 1952, "total_fragments": 2731, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Bradyrhizobium niftali", "strain": "strain=CNPSo 3448", "accession": "GCA_004571025.1", "taxid": 2560055, "species_taxid": 2560055, "relation_to_type": "type", "validated": true, "ani": 88.7634, "matched_fragments": 2014, "total_fragments": 2731, "ani_threshold": 95, "status": "below_threshold" }, { 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"strain": "strain=CGMCC 1.10947", "accession": "GCA_007830205.1", "taxid": 993502, "species_taxid": 993502, "relation_to_type": "type", "validated": true, "ani": 88.5697, "matched_fragments": 1880, "total_fragments": 2731, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Bradyrhizobium daqingense", "strain": "strain=CCBAU 15774", "accession": "GCA_021044685.1", "taxid": 993502, "species_taxid": 993502, "relation_to_type": "type", "validated": true, "ani": 88.562, "matched_fragments": 1912, "total_fragments": 2731, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Bradyrhizobium betae", "strain": "strain=CECT 5829", "accession": "GCA_024806875.1", "taxid": 244734, "species_taxid": 244734, "relation_to_type": "type", "validated": true, "ani": 88.4602, "matched_fragments": 1726, "total_fragments": 2731, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Bradyrhizobium guangdongense", "strain": "strain=CCBAU 51649", "accession": "GCA_004114975.1", "taxid": 1325090, "species_taxid": 1325090, "relation_to_type": "type", "validated": true, "ani": 87.2566, "matched_fragments": 1873, "total_fragments": 2731, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Bradyrhizobium guangzhouense", "strain": "strain=CCBAU 51670", "accession": "GCA_004114955.1", "taxid": 1325095, "species_taxid": 1325095, "relation_to_type": "type", "validated": true, "ani": 87.0254, "matched_fragments": 1763, "total_fragments": 2731, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Bradyrhizobium oropedii", "strain": "strain=Pear76", "accession": "GCA_020889685.1", "taxid": 1571201, "species_taxid": 1571201, "relation_to_type": "type", "validated": true, "ani": 82.6654, "matched_fragments": 1384, "total_fragments": 2731, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Bradyrhizobium acaciae", "strain": "strain=10BB", "accession": "GCA_020889785.1", "taxid": 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