{ "type": "genome", "identifier": "GCF_004114895.1", "organism": "Corynebacterium pelargi", "title": "Corynebacterium pelargi", "description": "na", "data type": "Genome sequencing and assembly", "organization": "Bielefeld University", "publication": [ {} ], "properties": { "assembly_accession": "GCF_004114895.1", "bioproject": "PRJNA224116", "biosample": "SAMN06041739", "wgs_master": "na", "refseq_category": "reference genome", "taxid": "1471400", "species_taxid": "1471400", "organism_name": "Corynebacterium pelargi", "infraspecific_name": "strain=136/3", "isolate": "na", "version_status": "latest", "assembly_level": "Complete Genome", "release_type": "Major", "genome_rep": "Full", "seq_rel_date": "2019/01/28", "asm_name": "ASM411489v1", "asm_submitter": "Bielefeld University", "gbrs_paired_asm": "GCA_004114895.1", "paired_asm_comp": "identical", "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/004/114/895/GCF_004114895.1_ASM411489v1", "excluded_from_refseq": "na", "relation_to_type_material": "assembly from type material", "asm_not_live_date": "na ", "assembly_type": "haploid", "group": "bacteria", "genome_size": "2370062", "genome_size_ungapped": "2370062", "gc_percent": "58.000000", "replicon_count": "1", "scaffold_count": "1", "contig_count": "1", "annotation_provider": "NCBI RefSeq", "annotation_name": "GCF_004114895.1-RS_2024_04_03", "annotation_date": "2024-04-03", "total_gene_count": "2197", "protein_coding_gene_count": "2121", "non_coding_gene_count": "65", "pubmed_id": "na" }, "dbXrefs": [], "distribution": null, "Download": null, "status": "public", "visibility": null, "dateCreated": "2019-01-28", "dateModified": "2019-01-28", "datePublished": "2019-01-28", "_annotation": { "sample_count": 1, "sample_organism": [ "Corynebacterium pelargi" ], "sample_taxid": [ "1471400" ], "sample_host_organism": [ "Ciconia ciconia" ], "sample_host_organism_id": [], "sample_host_disease": [], "sample_host_disease_id": [], "sample_host_location": [ "Poland" ], "sample_host_location_id": [], "data_size": "0.669 MB", "sample_ph_range": { "min": null, "max": null }, "sample_temperature_range": { "min": null, "max": null }, "completeness": 99.54, "contamination": 0.0, "strain_heterogeneity": 0.0, "genome_count": 1 }, "data_type": "G", "data_source": "RefSeq", "_dfast": { "Total Sequence Length (bp)": "2370062", "Number of Sequences": "1", "Longest Sequences (bp)": "2370062", "N50 (bp)": "2370062", "Gap Ratio (%)": "0.000000", "GCcontent (%)": "58.2", "Number of CDSs": "2200", "Average Protein Length": "321.8", "Coding Ratio (%)": "89.6", "Number of rRNAs": "12", "Number of tRNAs": "51", "Number of CRISPRs": "1" }, "has_analysis": true, "_dfastqc": { "tc_result": [ { "organism_name": "Corynebacterium pelargi", "strain": "strain=136/3", "accession": "GCA_004114895.1", "taxid": 1471400, "species_taxid": 1471400, "relation_to_type": "type", "validated": true, "ani": 100.0, "matched_fragments": 790, "total_fragments": 790, "ani_threshold": 95, "status": "conclusive" }, { "organism_name": "Corynebacterium pelargi", "strain": "strain=CCM 8517", "accession": "GCA_014635485.1", "taxid": 1471400, "species_taxid": 1471400, "relation_to_type": "type", "validated": true, "ani": 99.972, "matched_fragments": 779, "total_fragments": 790, "ani_threshold": 95, "status": "conclusive" }, { "organism_name": "Corynebacterium pseudopelargi", "strain": "strain=812CH", "accession": "GCA_003814005.1", "taxid": 2080757, "species_taxid": 2080757, "relation_to_type": "type", "validated": true, "ani": 89.6862, "matched_fragments": 720, "total_fragments": 790, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Corynebacterium gerontici", "strain": "strain=W8", "accession": "GCA_003813985.1", "taxid": 2079234, "species_taxid": 2079234, "relation_to_type": "type", "validated": true, "ani": 82.115, "matched_fragments": 431, "total_fragments": 790, "ani_threshold": 95, "status": "below_threshold" }, { 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"GCA_012396315.1", "taxid": 57171, "species_taxid": 57171, "relation_to_type": "type", "validated": true, "ani": 77.4434, "matched_fragments": 106, "total_fragments": 790, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Corynebacterium resistens", "strain": "strain=DSM 45100", "accession": "GCA_000177535.2", "taxid": 258224, "species_taxid": 258224, "relation_to_type": "type", "validated": true, "ani": 77.4308, "matched_fragments": 90, "total_fragments": 790, "ani_threshold": 95, "status": "below_threshold" } ], "cc_result": { "completeness": 99.54, "contamination": 0.0, "strain_heterogeneity": 0.0 }, "gtdb_result": [ { "accession": "GCF_004114895.1", "gtdb_species": "s__Corynebacterium pelargi", "ani": 100.0, "matched_fragments": 790, "total_fragments": 790, "gtdb_taxonomy": "d__Bacteria;p__Actinobacteriota;c__Actinomycetia;o__Mycobacteriales;f__Mycobacteriaceae;g__Corynebacterium", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "100.00", 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