{ "type": "genome", "identifier": "GCF_004115805.1", "organism": "Arcobacter cloacae", "title": "Arcobacter cloacae", "description": "na", "data type": "Genome sequencing and assembly", "organization": "Universitat Rovira i Virgili", "publication": [ {} ], "properties": { "assembly_accession": "GCF_004115805.1", "bioproject": "PRJNA224116", "biosample": "SAMN07709793", "wgs_master": "NXII00000000.1", "refseq_category": "na", "taxid": "1054034", "species_taxid": "1054034", "organism_name": "Arcobacter cloacae", "infraspecific_name": "strain=CECT 7834", "isolate": "na", "version_status": "latest", "assembly_level": "Contig", "release_type": "Major", "genome_rep": "Full", "seq_rel_date": "2019/01/28", "asm_name": "ASM411580v1", "asm_submitter": "Universitat Rovira i Virgili", "gbrs_paired_asm": "GCA_004115805.1", "paired_asm_comp": "identical", "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/004/115/805/GCF_004115805.1_ASM411580v1", "excluded_from_refseq": "na", "relation_to_type_material": "assembly from type material", "asm_not_live_date": "na ", "assembly_type": "haploid", "group": "bacteria", "genome_size": "2775030", "genome_size_ungapped": "2775030", "gc_percent": "27.000000", "replicon_count": "0", "scaffold_count": "135", "contig_count": "135", "annotation_provider": "NCBI RefSeq", "annotation_name": "NCBI Prokaryotic Genome Annotation Pipeline (PGAP)", "annotation_date": "2024-01-29", "total_gene_count": "2895", "protein_coding_gene_count": "2790", "non_coding_gene_count": "58", "pubmed_id": "na" }, "dbXrefs": [], "distribution": null, "Download": null, "status": "public", "visibility": null, "dateCreated": "2019-01-28", "dateModified": "2019-01-28", "datePublished": "2019-01-28", "_annotation": { "sample_count": 1, "sample_organism": [ "Arcobacter cloacae" ], "sample_taxid": [ "1054034" ], "sample_host_organism": [], "sample_host_organism_id": [], "sample_host_disease": [], "sample_host_disease_id": [], "sample_host_location": [ "Spain" ], "sample_host_location_id": [], "data_size": "0.745 MB", "sample_ph_range": { "min": null, "max": null }, "sample_temperature_range": { "min": null, "max": null }, "completeness": 100.0, "contamination": 0.0, "strain_heterogeneity": 0.0, "genome_count": 1 }, "data_type": "G", "data_source": "RefSeq", "_dfast": { "Total Sequence Length (bp)": "2775030", "Number of Sequences": "135", "Longest Sequences (bp)": "255578", "N50 (bp)": "135485", "Gap Ratio (%)": "0.000000", "GCcontent (%)": "26.8", "Number of CDSs": "2723", "Average Protein Length": "309.9", "Coding Ratio (%)": "91.2", "Number of rRNAs": "3", "Number of tRNAs": "52", "Number of CRISPRs": "3" }, "has_analysis": true, "_dfastqc": { "tc_result": [ { "organism_name": "Arcobacter cloacae", "strain": "strain=CECT 7834", "accession": "GCA_004115805.1", "taxid": 1054034, "species_taxid": 1054034, "relation_to_type": "type", "validated": true, "ani": 100.0, "matched_fragments": 884, "total_fragments": 886, "ani_threshold": 95, "status": "conclusive" }, { "organism_name": "Arcobacter cloacae", "strain": "strain=LMG 26153", "accession": "GCA_013201935.1", "taxid": 1054034, "species_taxid": 1054034, "relation_to_type": "type", "validated": true, "ani": 99.9958, "matched_fragments": 885, "total_fragments": 886, "ani_threshold": 95, "status": "conclusive" }, { "organism_name": "Arcobacter aquimarinus", "strain": "strain=CECT 8442", "accession": "GCA_004115795.1", "taxid": 1315211, "species_taxid": 1315211, "relation_to_type": "type", "validated": true, "ani": 93.0653, "matched_fragments": 671, "total_fragments": 886, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Arcobacter aquimarinus", "strain": "strain=W63", "accession": "GCA_013177635.1", "taxid": 1315211, "species_taxid": 1315211, "relation_to_type": "type", "validated": true, "ani": 93.0264, "matched_fragments": 695, "total_fragments": 886, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Arcobacter ellisii", "strain": "strain=CECT 7837", "accession": "GCA_004115815.1", "taxid": 913109, "species_taxid": 913109, "relation_to_type": "type", "validated": true, "ani": 86.3512, "matched_fragments": 652, "total_fragments": 886, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Arcobacter ellisii", "strain": "strain=LMG 26155", "accession": "GCA_003544915.1", "taxid": 913109, "species_taxid": 913109, "relation_to_type": "type", "validated": true, "ani": 86.2081, "matched_fragments": 670, "total_fragments": 886, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Arcobacter suis", "strain": "strain=CECT7833", "accession": "GCA_004023465.1", "taxid": 1278212, "species_taxid": 1278212, "relation_to_type": "type", "validated": true, "ani": 84.5088, "matched_fragments": 575, "total_fragments": 886, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Arcobacter venerupis", "strain": "strain=LMG 26156", "accession": "GCA_013201665.1", "taxid": 1054033, "species_taxid": 1054033, "relation_to_type": "type", "validated": true, "ani": 83.5869, "matched_fragments": 610, "total_fragments": 886, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Aliarcobacter faecis", "strain": "strain=LMG 28519", "accession": "GCA_024584135.1", "taxid": 1564138, "species_taxid": 1564138, "relation_to_type": "type", "validated": true, "ani": 80.4131, "matched_fragments": 466, "total_fragments": 886, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Arcobacter vandammei", "strain": "strain=LMG 31429", "accession": "GCA_024583975.1", "taxid": 2782243, "species_taxid": 2782243, "relation_to_type": "type", "validated": true, "ani": 80.2357, "matched_fragments": 434, "total_fragments": 886, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Arcobacter vandammei", "strain": "strain=R-73987", "accession": "GCA_016106035.1", "taxid": 2782243, "species_taxid": 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"vibrio_cell_shape": 0.222, "spiral_cell_shape": 0.111 }, "_genome_taxon": [ "Arcobacter", "cloacae" ], "quality": 4, "quality_label": "\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f" }