{ "type": "genome", "identifier": "GCF_004115945.1", "organism": "Deinococcus metallilatus", "title": "Deinococcus metallilatus", "description": "na", "data type": "Genome sequencing and assembly", "organization": "Korea university", "publication": [ {} ], "properties": { "assembly_accession": "GCF_004115945.1", "bioproject": "PRJNA224116", "biosample": "SAMN10769378", "wgs_master": "SDEC00000000.1", "refseq_category": "na", "taxid": "1211322", "species_taxid": "1211322", "organism_name": "Deinococcus metallilatus", "infraspecific_name": "strain=MA1002", "isolate": "na", "version_status": "latest", "assembly_level": "Contig", "release_type": "Major", "genome_rep": "Full", "seq_rel_date": "2019/01/28", "asm_name": "ASM411594v1", "asm_submitter": "Korea university", "gbrs_paired_asm": "GCA_004115945.1", "paired_asm_comp": "identical", "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/004/115/945/GCF_004115945.1_ASM411594v1", "excluded_from_refseq": "na", "relation_to_type_material": "assembly from type material", "asm_not_live_date": "na ", "assembly_type": "haploid", "group": "bacteria", "genome_size": "4019309", "genome_size_ungapped": "4019309", "gc_percent": "68.500000", "replicon_count": "0", "scaffold_count": "148", "contig_count": "148", "annotation_provider": "NCBI RefSeq", "annotation_name": "GCF_004115945.1-RS_2024_08_01", "annotation_date": "2024-08-01", "total_gene_count": "4052", "protein_coding_gene_count": "3934", "non_coding_gene_count": "62", "pubmed_id": "na" }, "dbXrefs": [], "distribution": null, "Download": null, "status": "public", "visibility": null, "dateCreated": "2019-01-28", "dateModified": "2019-01-28", "datePublished": "2019-01-28", "_annotation": { "sample_count": 1, "sample_organism": [ "Deinococcus metallilatus" ], "sample_taxid": [ "1211322" ], "sample_host_organism": [], "sample_host_organism_id": [], "sample_host_disease": [], "sample_host_disease_id": [], "sample_host_location": [ "South Korea:Seoul" ], "sample_host_location_id": [], "data_size": "1.101 MB", "sample_ph_range": { "min": null, "max": null }, "sample_temperature_range": { "min": null, "max": null }, "completeness": 100.0, "contamination": 0.0, "strain_heterogeneity": 0.0, "genome_count": 1 }, "data_type": "G", "data_source": "RefSeq", "_dfast": { "Total Sequence Length (bp)": "4019309", "Number of Sequences": "148", "Longest Sequences (bp)": "437911", "N50 (bp)": "246168", "Gap Ratio (%)": "0.000000", "GCcontent (%)": "68.6", "Number of CDSs": "3927", "Average Protein Length": "298.8", "Coding Ratio (%)": "87.6", "Number of rRNAs": "1", "Number of tRNAs": "51", "Number of CRISPRs": "7" }, "has_analysis": true, "_dfastqc": { "tc_result": [ { "organism_name": "Deinococcus metallilatus", "strain": "strain=MA1002", "accession": "GCA_004115945.1", "taxid": 1211322, "species_taxid": 1211322, "relation_to_type": "type", "validated": true, "ani": 100.0, "matched_fragments": 1302, "total_fragments": 1308, "ani_threshold": 95, 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"vibrio_cell_shape": 0.0, "spiral_cell_shape": 0.0 }, "_genome_taxon": [ "Deinococcus", "metallilatus" ], "quality": 3, "quality_label": "\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f" }