{ "type": "genome", "identifier": "GCF_004116265.1", "organism": "Anaerobacillus alkaliphilus", "title": "Anaerobacillus alkaliphilus", "description": "na", "data type": "Genome sequencing and assembly", "organization": "Seqomics Ltd.", "publication": [ {} ], "properties": { "assembly_accession": "GCF_004116265.1", "bioproject": "PRJNA224116", "biosample": "SAMN09630408", "wgs_master": "QOUX00000000.1", "refseq_category": "reference genome", "taxid": "1548597", "species_taxid": "1548597", "organism_name": "Anaerobacillus alkaliphilus", "infraspecific_name": "strain=B16-10", "isolate": "na", "version_status": "latest", "assembly_level": "Contig", "release_type": "Major", "genome_rep": "Full", "seq_rel_date": "2019/01/28", "asm_name": "ASM411626v1", "asm_submitter": "Seqomics Ltd.", "gbrs_paired_asm": "GCA_004116265.1", "paired_asm_comp": "identical", "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/004/116/265/GCF_004116265.1_ASM411626v1", "excluded_from_refseq": "na", "relation_to_type_material": "assembly from type material", "asm_not_live_date": "na ", "assembly_type": "haploid", "group": "bacteria", "genome_size": "4909004", "genome_size_ungapped": "4909004", "gc_percent": "37.000000", "replicon_count": "0", "scaffold_count": "71", "contig_count": "71", "annotation_provider": "NCBI RefSeq", "annotation_name": "GCF_004116265.1-RS_2024_04_03", "annotation_date": "2024-04-03", "total_gene_count": "4978", "protein_coding_gene_count": "4749", "non_coding_gene_count": "189", "pubmed_id": "30672727" }, "dbXrefs": [], "distribution": null, "Download": null, "status": "public", "visibility": null, "dateCreated": "2019-01-28", "dateModified": "2019-01-28", "datePublished": "2019-01-28", "_annotation": { "sample_count": 1, "sample_organism": [ "Anaerobacillus alkaliphilus" ], "sample_taxid": [ "1548597" ], "sample_host_organism": [], "sample_host_organism_id": [], "sample_host_disease": [], "sample_host_disease_id": [], "sample_host_location": [ "Hungary: Kiskunsag National Park" ], "sample_host_location_id": [], "data_size": "1.387 MB", "sample_ph_range": { "min": null, "max": null }, "sample_temperature_range": { "min": null, "max": null }, "completeness": 100.0, "contamination": 4.17, "strain_heterogeneity": 0.0, "genome_count": 1 }, "data_type": "G", "data_source": "RefSeq", "_dfast": { "Total Sequence Length (bp)": "4909004", "Number of Sequences": "71", "Longest Sequences (bp)": "1075112", "N50 (bp)": "669268", "Gap Ratio (%)": "0.000000", "GCcontent (%)": "36.9", "Number of CDSs": "4820", "Average Protein Length": "287.2", "Coding Ratio (%)": "84.6", "Number of rRNAs": "11", "Number of tRNAs": "134", "Number of CRISPRs": "0" }, "has_analysis": true, "_dfastqc": { "tc_result": [ { "organism_name": "Anaerobacillus alkaliphilus", "strain": "strain=B16-10", "accession": "GCA_004116265.1", "taxid": 1548597, "species_taxid": 1548597, "relation_to_type": "type", "validated": true, "ani": 100.0, "matched_fragments": 1614, 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"ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Anaerobacillus arseniciselenatis", "strain": "strain=DSM 15340", "accession": "GCA_001865995.1", "taxid": 85682, "species_taxid": 85682, "relation_to_type": "type", "validated": true, "ani": 77.9696, "matched_fragments": 313, "total_fragments": 1617, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Alkalihalobacillus alcalophilus", "strain": "strain=AV1934", "accession": "GCA_000292245.2", "taxid": 1445, "species_taxid": 1445, "relation_to_type": "type", "validated": true, "ani": 76.9466, "matched_fragments": 85, "total_fragments": 1617, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Neobacillus cucumis", "strain": "strain=DSM 101566", "accession": "GCA_016908975.1", "taxid": 1740721, "species_taxid": 1740721, "relation_to_type": "type", "validated": true, "ani": 76.826, "matched_fragments": 57, "total_fragments": 1617, "ani_threshold": 95, "status": "below_threshold" 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"N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCF_001866005.1", "gtdb_species": "s__Anaerobacillus alkalilacustris", "ani": 78.4186, "matched_fragments": 302, "total_fragments": 1617, "gtdb_taxonomy": "d__Bacteria;p__Firmicutes;c__Bacilli;o__Bacillales_H;f__Anaerobacillaceae;g__Anaerobacillus", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCF_001865995.1", "gtdb_species": "s__Anaerobacillus arseniciselenatis", "ani": 77.9696, "matched_fragments": 313, "total_fragments": 1617, "gtdb_taxonomy": "d__Bacteria;p__Firmicutes;c__Bacilli;o__Bacillales_H;f__Anaerobacillaceae;g__Anaerobacillus", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", 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