{ "tc_result": [ { "organism_name": "Halarcobacter ebronensis", "strain": "strain=CECT 8441", "accession": "GCA_004116565.1", "taxid": 1462615, "species_taxid": 1462615, "relation_to_type": "type", "validated": true, "ani": 100.0, "matched_fragments": 1018, "total_fragments": 1020, "ani_threshold": 95, "status": "conclusive" }, { "organism_name": "Halarcobacter ebronensis", "strain": "strain=LMG 27922", "accession": "GCA_013201825.1", "taxid": 1462615, "species_taxid": 1462615, "relation_to_type": "type", "validated": true, "ani": 99.9931, "matched_fragments": 1018, "total_fragments": 1020, "ani_threshold": 95, "status": "conclusive" }, { "organism_name": "Halarcobacter anaerophilus", "strain": "strain=DSM 24636", "accession": "GCA_004116345.1", "taxid": 877500, "species_taxid": 877500, "relation_to_type": "type", "validated": true, "ani": 80.3762, "matched_fragments": 585, "total_fragments": 1020, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Halarcobacter anaerophilus", "strain": "strain=DSM 24636", "accession": "GCA_006459125.1", "taxid": 877500, "species_taxid": 877500, "relation_to_type": "type", "validated": true, "ani": 80.3457, "matched_fragments": 586, "total_fragments": 1020, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "[Halarcobacter] arenosus", "strain": "strain=CAU 1517", "accession": "GCA_005771535.1", "taxid": 2576037, "species_taxid": 2576037, "relation_to_type": "type", "validated": true, "ani": 79.969, "matched_fragments": 532, "total_fragments": 1020, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Halarcobacter bivalviorum", "strain": "strain=LMG 26154", "accession": "GCA_003346815.1", "taxid": 663364, "species_taxid": 663364, "relation_to_type": "type", "validated": true, "ani": 79.944, "matched_fragments": 484, "total_fragments": 1020, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Malaciobacter molluscorum", "strain": "strain=CECT 7696", "accession": "GCA_003544935.1", "taxid": 1032072, "species_taxid": 1032072, "relation_to_type": "type", "validated": true, "ani": 79.2228, "matched_fragments": 424, "total_fragments": 1020, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Malaciobacter molluscorum", "strain": "strain=F98-3", "accession": "GCA_002701265.1", "taxid": 1032072, "species_taxid": 1032072, "relation_to_type": "type", "validated": true, "ani": 79.1813, "matched_fragments": 427, "total_fragments": 1020, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Aliarcobacter butzleri", "strain": "strain=RM4018", "accession": "GCA_000014025.1", "taxid": 28197, "species_taxid": 28197, "relation_to_type": "type", "validated": true, "ani": 78.8573, "matched_fragments": 335, "total_fragments": 1020, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Arcobacter nitrofigilis", "strain": "strain=DSM 7299", "accession": "GCA_000092245.1", "taxid": 28199, "species_taxid": 28199, "relation_to_type": "type", "validated": true, "ani": 78.8047, "matched_fragments": 402, "total_fragments": 1020, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Aliarcobacter skirrowii", "strain": "strain=LMG 6621", "accession": "GCA_024584055.1", "taxid": 28200, "species_taxid": 28200, "relation_to_type": "type", "validated": true, "ani": 78.6626, "matched_fragments": 266, "total_fragments": 1020, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Arcobacter cloacae", "strain": "strain=LMG 26153", "accession": "GCA_013201935.1", "taxid": 1054034, "species_taxid": 1054034, "relation_to_type": "type", "validated": true, "ani": 78.6394, "matched_fragments": 376, "total_fragments": 1020, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Arcobacter cloacae", "strain": "strain=CECT 7834", "accession": "GCA_004115805.1", "taxid": 1054034, "species_taxid": 1054034, "relation_to_type": "type", "validated": true, "ani": 78.6346, "matched_fragments": 370, "total_fragments": 1020, "ani_threshold": 95, "status": "below_threshold" } ], "cc_result": { "completeness": 100.0, "contamination": 0.38, "strain_heterogeneity": 0.0 }, "gtdb_result": [ { "accession": "GCF_013201825.1", "gtdb_species": "s__Halarcobacter ebronensis", "ani": 99.9931, "matched_fragments": 1018, "total_fragments": 1020, "gtdb_taxonomy": "d__Bacteria;p__Campylobacterota;c__Campylobacteria;o__Campylobacterales;f__Arcobacteraceae;g__Halarcobacter", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "98.25", "min_intra_species_ani": "96.51", "mean_intra_species_af": "0.95", "min_intra_species_af": "0.90", "num_clustered_genomes": 3, "status": "conclusive" }, { "accession": "GCF_006459125.1", "gtdb_species": "s__Halarcobacter anaerophilus", "ani": 80.3453, "matched_fragments": 586, "total_fragments": 1020, "gtdb_taxonomy": "d__Bacteria;p__Campylobacterota;c__Campylobacteria;o__Campylobacterales;f__Arcobacteraceae;g__Halarcobacter", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "98.86", "min_intra_species_ani": "97.73", "mean_intra_species_af": "0.95", "min_intra_species_af": "0.89", "num_clustered_genomes": 3, "status": "-" }, { "accession": "GCA_003252105.1", "gtdb_species": "s__Halarcobacter sp003252105", "ani": 80.1571, "matched_fragments": 492, "total_fragments": 1020, "gtdb_taxonomy": "d__Bacteria;p__Campylobacterota;c__Campylobacteria;o__Campylobacterales;f__Arcobacteraceae;g__Halarcobacter", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCF_005771535.1", "gtdb_species": "s__Halarcobacter arenosus", "ani": 79.9757, "matched_fragments": 531, "total_fragments": 1020, "gtdb_taxonomy": "d__Bacteria;p__Campylobacterota;c__Campylobacteria;o__Campylobacterales;f__Arcobacteraceae;g__Halarcobacter", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCF_003346815.1", "gtdb_species": "s__Halarcobacter bivalviorum", "ani": 79.9746, "matched_fragments": 481, "total_fragments": 1020, "gtdb_taxonomy": "d__Bacteria;p__Campylobacterota;c__Campylobacteria;o__Campylobacterales;f__Arcobacteraceae;g__Halarcobacter", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "98.23", "min_intra_species_ani": "96.46", "mean_intra_species_af": "0.96", "min_intra_species_af": "0.92", "num_clustered_genomes": 3, "status": "-" }, { "accession": "GCA_004118855.1", "gtdb_species": "s__Halarcobacter sp004118855", "ani": 79.9529, "matched_fragments": 474, "total_fragments": 1020, "gtdb_taxonomy": "d__Bacteria;p__Campylobacterota;c__Campylobacteria;o__Campylobacterales;f__Arcobacteraceae;g__Halarcobacter", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCA_004116455.1", "gtdb_species": "s__Halarcobacter sp004116455", "ani": 79.4633, "matched_fragments": 458, "total_fragments": 1020, "gtdb_taxonomy": "d__Bacteria;p__Campylobacterota;c__Campylobacteria;o__Campylobacterales;f__Arcobacteraceae;g__Halarcobacter", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "96.86", "min_intra_species_ani": "96.86", "mean_intra_species_af": "0.84", "min_intra_species_af": "0.84", "num_clustered_genomes": 2, "status": "-" }, { "accession": "GCA_001895145.1", "gtdb_species": "s__Halarcobacter sp001895145", "ani": 79.4582, "matched_fragments": 458, "total_fragments": 1020, "gtdb_taxonomy": "d__Bacteria;p__Campylobacterota;c__Campylobacteria;o__Campylobacterales;f__Arcobacteraceae;g__Halarcobacter", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCA_013373175.1", "gtdb_species": "s__Halarcobacter sp013373175", "ani": 79.4507, "matched_fragments": 456, "total_fragments": 1020, "gtdb_taxonomy": "d__Bacteria;p__Campylobacterota;c__Campylobacteria;o__Campylobacterales;f__Arcobacteraceae;g__Halarcobacter", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCF_003544935.1", "gtdb_species": "s__Malaciobacter molluscorum", "ani": 79.2288, "matched_fragments": 423, "total_fragments": 1020, "gtdb_taxonomy": "d__Bacteria;p__Campylobacterota;c__Campylobacteria;o__Campylobacterales;f__Arcobacteraceae;g__Malaciobacter", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "99.44", "min_intra_species_ani": "98.88", "mean_intra_species_af": "0.96", "min_intra_species_af": "0.91", "num_clustered_genomes": 3, "status": "-" }, { "accession": "GCA_002869535.1", "gtdb_species": "s__Arcobacter sp002869535", "ani": 78.9395, "matched_fragments": 360, "total_fragments": 1020, "gtdb_taxonomy": "d__Bacteria;p__Campylobacterota;c__Campylobacteria;o__Campylobacterales;f__Arcobacteraceae;g__Arcobacter", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCF_003063295.1", "gtdb_species": "s__Aliarcobacter lacus", "ani": 78.9197, "matched_fragments": 327, "total_fragments": 1020, "gtdb_taxonomy": "d__Bacteria;p__Campylobacterota;c__Campylobacteria;o__Campylobacterales;f__Arcobacteraceae;g__Aliarcobacter", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCF_900187115.1", "gtdb_species": "s__Aliarcobacter butzleri", "ani": 78.8087, "matched_fragments": 338, "total_fragments": 1020, "gtdb_taxonomy": "d__Bacteria;p__Campylobacterota;c__Campylobacteria;o__Campylobacterales;f__Arcobacteraceae;g__Aliarcobacter", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "97.53", "min_intra_species_ani": "96.98", "mean_intra_species_af": "0.89", "min_intra_species_af": "0.81", "num_clustered_genomes": 50, "status": "-" }, { "accession": "GCF_000092245.1", "gtdb_species": "s__Arcobacter nitrofigilis", "ani": 78.8049, "matched_fragments": 402, "total_fragments": 1020, "gtdb_taxonomy": "d__Bacteria;p__Campylobacterota;c__Campylobacteria;o__Campylobacterales;f__Arcobacteraceae;g__Arcobacter", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCF_013201935.1", "gtdb_species": "s__Aliarcobacter cloacae", "ani": 78.6671, "matched_fragments": 373, "total_fragments": 1020, "gtdb_taxonomy": "d__Bacteria;p__Campylobacterota;c__Campylobacteria;o__Campylobacterales;f__Arcobacteraceae;g__Aliarcobacter", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "97.96", "min_intra_species_ani": "95.91", "mean_intra_species_af": "0.93", "min_intra_species_af": "0.87", "num_clustered_genomes": 3, "status": "-" }, { "accession": "GCF_003660105.1", "gtdb_species": "s__Aliarcobacter cryaerophilus", "ani": 78.0462, "matched_fragments": 281, "total_fragments": 1020, "gtdb_taxonomy": "d__Bacteria;p__Campylobacterota;c__Campylobacteria;o__Campylobacterales;f__Arcobacteraceae;g__Aliarcobacter", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "99.99", "min_intra_species_ani": "99.99", "mean_intra_species_af": "1.00", "min_intra_species_af": "0.99", "num_clustered_genomes": 3, "status": "-" } ] }