{ "type": "genome", "identifier": "GCF_004116565.1", "organism": "Halarcobacter ebronensis", "title": "Halarcobacter ebronensis", "description": "na", "data type": "Genome sequencing and assembly", "organization": "Universitat Rovira i Virgili", "publication": [ {} ], "properties": { "assembly_accession": "GCF_004116565.1", "bioproject": "PRJNA224116", "biosample": "SAMN07767211", "wgs_master": "PDKK00000000.1", "refseq_category": "na", "taxid": "1462615", "species_taxid": "1462615", "organism_name": "Halarcobacter ebronensis", "infraspecific_name": "strain=CECT 8441", "isolate": "na", "version_status": "latest", "assembly_level": "Scaffold", "release_type": "Major", "genome_rep": "Full", "seq_rel_date": "2019/01/29", "asm_name": "ASM411656v1", "asm_submitter": "Universitat Rovira i Virgili", "gbrs_paired_asm": "GCA_004116565.1", "paired_asm_comp": "identical", "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/004/116/565/GCF_004116565.1_ASM411656v1", "excluded_from_refseq": "na", "relation_to_type_material": "assembly from type material", "asm_not_live_date": "na ", "assembly_type": "haploid", "group": "bacteria", "genome_size": "3147783", "genome_size_ungapped": "3147122", "gc_percent": "29.000000", "replicon_count": "0", "scaffold_count": "103", "contig_count": "103", "annotation_provider": "NCBI RefSeq", "annotation_name": "GCF_004116565.1-RS_2024_08_05", "annotation_date": "2024-08-05", "total_gene_count": "3145", "protein_coding_gene_count": "3067", "non_coding_gene_count": "49", "pubmed_id": "na" }, "dbXrefs": [], "distribution": null, "Download": null, "status": "public", "visibility": null, "dateCreated": "2019-01-29", "dateModified": "2019-01-29", "datePublished": "2019-01-29", "_annotation": { "sample_count": 1, "sample_organism": [ "Halarcobacter ebronensis" ], "sample_taxid": [ "1462615" ], "sample_host_organism": [ "mussel" ], "sample_host_organism_id": [], "sample_host_disease": [], "sample_host_disease_id": [], "sample_host_location": [ "Spain" ], "sample_host_location_id": [], "data_size": "0.855 MB", "sample_ph_range": { "min": null, "max": null }, "sample_temperature_range": { "min": null, "max": null }, "completeness": 100.0, "contamination": 0.38, "strain_heterogeneity": 0.0, "genome_count": 1 }, "data_type": "G", "data_source": "RefSeq", "_dfast": { "Total Sequence Length (bp)": "3147783", "Number of Sequences": "103", "Longest Sequences (bp)": "481466", "N50 (bp)": "188425", "Gap Ratio (%)": "0.020999", "GCcontent (%)": "29.2", "Number of CDSs": "3029", "Average Protein Length": "317.9", "Coding Ratio (%)": "91.8", "Number of rRNAs": "2", "Number of tRNAs": "41", "Number of CRISPRs": "1" }, "has_analysis": true, "_dfastqc": { "tc_result": [ { "organism_name": "Halarcobacter ebronensis", "strain": "strain=CECT 8441", "accession": "GCA_004116565.1", "taxid": 1462615, "species_taxid": 1462615, "relation_to_type": "type", "validated": true, "ani": 100.0, "matched_fragments": 1018, "total_fragments": 1020, "ani_threshold": 95, "status": "conclusive" }, { "organism_name": "Halarcobacter ebronensis", "strain": "strain=LMG 27922", "accession": "GCA_013201825.1", "taxid": 1462615, "species_taxid": 1462615, "relation_to_type": "type", "validated": true, "ani": 99.9931, "matched_fragments": 1018, "total_fragments": 1020, "ani_threshold": 95, "status": "conclusive" }, { "organism_name": "Halarcobacter anaerophilus", "strain": "strain=DSM 24636", "accession": "GCA_004116345.1", "taxid": 877500, "species_taxid": 877500, "relation_to_type": "type", "validated": true, "ani": 80.3762, "matched_fragments": 585, "total_fragments": 1020, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Halarcobacter anaerophilus", "strain": "strain=DSM 24636", "accession": "GCA_006459125.1", "taxid": 877500, "species_taxid": 877500, "relation_to_type": "type", "validated": true, "ani": 80.3457, "matched_fragments": 586, "total_fragments": 1020, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "[Halarcobacter] arenosus", "strain": "strain=CAU 1517", "accession": "GCA_005771535.1", "taxid": 2576037, "species_taxid": 2576037, "relation_to_type": "type", "validated": true, "ani": 79.969, "matched_fragments": 532, "total_fragments": 1020, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Halarcobacter bivalviorum", "strain": "strain=LMG 26154", "accession": "GCA_003346815.1", "taxid": 663364, "species_taxid": 663364, "relation_to_type": "type", "validated": true, "ani": 79.944, "matched_fragments": 484, "total_fragments": 1020, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Malaciobacter molluscorum", "strain": "strain=CECT 7696", "accession": "GCA_003544935.1", "taxid": 1032072, "species_taxid": 1032072, "relation_to_type": "type", "validated": true, "ani": 79.2228, "matched_fragments": 424, "total_fragments": 1020, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Malaciobacter 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