{ "type": "genome", "identifier": "GCF_004116675.1", "organism": "Halarcobacter bivalviorum", "title": "Halarcobacter bivalviorum", "description": "na", "data type": "Genome sequencing and assembly", "organization": "Universitat Rovira i Virgili", "publication": [ {} ], "properties": { "assembly_accession": "GCF_004116675.1", "bioproject": "PRJNA224116", "biosample": "SAMN07767209", "wgs_master": "PDKM00000000.1", "refseq_category": "na", "taxid": "663364", "species_taxid": "663364", "organism_name": "Halarcobacter bivalviorum", "infraspecific_name": "strain=CECT 7835", "isolate": "na", "version_status": "latest", "assembly_level": "Contig", "release_type": "Major", "genome_rep": "Full", "seq_rel_date": "2019/01/29", "asm_name": "ASM411667v1", "asm_submitter": "Universitat Rovira i Virgili", "gbrs_paired_asm": "GCA_004116675.1", "paired_asm_comp": "identical", "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/004/116/675/GCF_004116675.1_ASM411667v1", "excluded_from_refseq": "na", "relation_to_type_material": "assembly from type material", "asm_not_live_date": "na ", "assembly_type": "haploid", "group": "bacteria", "genome_size": "2745053", "genome_size_ungapped": "2745053", "gc_percent": "28.000000", "replicon_count": "0", "scaffold_count": "179", "contig_count": "179", "annotation_provider": "NCBI RefSeq", "annotation_name": "GCF_004116675.1-RS_2025_01_07", "annotation_date": "2025-01-07", "total_gene_count": "2848", "protein_coding_gene_count": "2744", "non_coding_gene_count": "52", "pubmed_id": "na" }, "dbXrefs": [], "distribution": null, "Download": null, "status": "public", "visibility": null, "dateCreated": "2019-01-29", "dateModified": "2019-01-29", "datePublished": "2019-01-29", "_annotation": { "sample_count": 1, "sample_organism": [ "Halarcobacter bivalviorum" ], "sample_taxid": [ "663364" ], "sample_host_organism": [ "mussel" ], "sample_host_organism_id": [], "sample_host_disease": [], "sample_host_disease_id": [], "sample_host_location": [ "Spain" ], "sample_host_location_id": [], "data_size": "0.740 MB", "sample_ph_range": { "min": null, "max": null }, "sample_temperature_range": { "min": null, "max": null }, "completeness": 100.0, "contamination": 9.78, "strain_heterogeneity": 33.33, "genome_count": 1 }, "data_type": "G", "data_source": "RefSeq", "_dfast": { "Total Sequence Length (bp)": "2745053", "Number of Sequences": "179", "Longest Sequences (bp)": "671391", "N50 (bp)": "461014", "Gap Ratio (%)": "0.000000", "GCcontent (%)": "28.2", "Number of CDSs": "2622", "Average Protein Length": "318.2", "Coding Ratio (%)": "91.2", "Number of rRNAs": "4", "Number of tRNAs": "43", "Number of CRISPRs": "0" }, "has_analysis": true, "_dfastqc": { "tc_result": [ { "organism_name": "Halarcobacter bivalviorum", "strain": "strain=CECT 7835", "accession": "GCA_004116675.1", "taxid": 663364, "species_taxid": 663364, "relation_to_type": "type", "validated": true, "ani": 100.0, "matched_fragments": 877, "total_fragments": 878, "ani_threshold": 95, "status": "conclusive" }, { "organism_name": "Halarcobacter bivalviorum", "strain": "strain=LMG 26154", "accession": "GCA_003346815.1", "taxid": 663364, "species_taxid": 663364, "relation_to_type": "type", "validated": true, "ani": 99.9997, "matched_fragments": 878, "total_fragments": 878, "ani_threshold": 95, "status": "conclusive" }, { "organism_name": "[Halarcobacter] arenosus", "strain": "strain=CAU 1517", "accession": "GCA_005771535.1", "taxid": 2576037, "species_taxid": 2576037, "relation_to_type": "type", "validated": true, "ani": 80.667, "matched_fragments": 476, "total_fragments": 878, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Malaciobacter mytili", "strain": "strain=LMG 24559", "accession": "GCA_003346775.1", "taxid": 603050, "species_taxid": 603050, "relation_to_type": "type", "validated": true, "ani": 80.2464, "matched_fragments": 506, "total_fragments": 878, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Malaciobacter mytili", "strain": "strain=CECT 7386", "accession": "GCA_004116555.1", "taxid": 603050, "species_taxid": 603050, "relation_to_type": "type", "validated": true, "ani": 80.2303, "matched_fragments": 491, "total_fragments": 878, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Malaciobacter pacificus", "strain": "strain=LMG 26638", "accession": "GCA_004214795.1", "taxid": 1080223, "species_taxid": 1080223, "relation_to_type": "type", "validated": true, "ani": 80.2122, "matched_fragments": 401, "total_fragments": 878, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Malaciobacter pacificus", "strain": "strain=CGMCC 1.11011", "accession": "GCA_014636355.1", "taxid": 1080223, "species_taxid": 1080223, "relation_to_type": "type", "validated": true, "ani": 80.0911, "matched_fragments": 408, "total_fragments": 878, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Malaciobacter halophilus", "strain": "strain=DSM 18005", "accession": "GCA_002837275.1", "taxid": 197482, "species_taxid": 197482, "relation_to_type": "type", "validated": true, "ani": 79.973, "matched_fragments": 461, "total_fragments": 878, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Halarcobacter ebronensis", "strain": "strain=CECT 8441", "accession": "GCA_004116565.1", "taxid": 1462615, "species_taxid": 1462615, "relation_to_type": "type", "validated": true, "ani": 79.9524, "matched_fragments": 469, "total_fragments": 878, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Halarcobacter ebronensis", "strain": "strain=LMG 27922", "accession": "GCA_013201825.1", "taxid": 1462615, "species_taxid": 1462615, "relation_to_type": "type", "validated": true, "ani": 79.9283, "matched_fragments": 473, "total_fragments": 878, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Arcobacter ellisii", "strain": "strain=CECT 7837", "accession": "GCA_004115815.1", "taxid": 913109, "species_taxid": 913109, "relation_to_type": "type", "validated": true, "ani": 79.6338, "matched_fragments": 415, "total_fragments": 878, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Arcobacter ellisii", "strain": "strain=LMG 26155", "accession": "GCA_003544915.1", "taxid": 913109, "species_taxid": 913109, "relation_to_type": "type", "validated": true, "ani": 79.5399, "matched_fragments": 414, "total_fragments": 878, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Malaciobacter molluscorum", "strain": "strain=CECT 7696", "accession": "GCA_003544935.1", "taxid": 1032072, "species_taxid": 1032072, "relation_to_type": "type", "validated": true, "ani": 79.4914, "matched_fragments": 409, "total_fragments": 878, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Halarcobacter anaerophilus", "strain": "strain=DSM 24636", "accession": "GCA_004116345.1", "taxid": 877500, "species_taxid": 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