{ "type": "genome", "identifier": "GCF_004117855.1", "organism": "Modicisalibacter coralii", "title": "Modicisalibacter coralii", "description": "na", "data type": "Genome sequencing and assembly", "organization": "UFRJ", "publication": [ {} ], "properties": { "assembly_accession": "GCF_004117855.1", "bioproject": "PRJNA224116", "biosample": "SAMN09880010", "wgs_master": "QWBW00000000.1", "refseq_category": "reference genome", "taxid": "2304602", "species_taxid": "2304602", "organism_name": "Modicisalibacter coralii", "infraspecific_name": "strain=362.1", "isolate": "na", "version_status": "latest", "assembly_level": "Contig", "release_type": "Major", "genome_rep": "Full", "seq_rel_date": "2019/01/29", "asm_name": "ASM411785v1", "asm_submitter": "UFRJ", "gbrs_paired_asm": "GCA_004117855.1", "paired_asm_comp": "identical", "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/004/117/855/GCF_004117855.1_ASM411785v1", "excluded_from_refseq": "na", "relation_to_type_material": "assembly from type material", "asm_not_live_date": "na ", "assembly_type": "haploid", "group": "bacteria", "genome_size": "4438786", "genome_size_ungapped": "4438786", "gc_percent": "66.500000", "replicon_count": "0", "scaffold_count": "74", "contig_count": "74", "annotation_provider": "NCBI RefSeq", "annotation_name": "GCF_004117855.1-RS_2024_04_21", "annotation_date": "2024-04-21", "total_gene_count": "4181", "protein_coding_gene_count": "4042", "non_coding_gene_count": "86", "pubmed_id": "na" }, "dbXrefs": [], "distribution": null, "Download": null, "status": "public", "visibility": null, "dateCreated": "2019-01-29", "dateModified": "2019-01-29", "datePublished": "2019-01-29", "_annotation": { "sample_count": 1, "sample_organism": [ "Modicisalibacter coralii" ], "sample_taxid": [ "2304602" ], "sample_host_organism": [ "Mussismilia braziliensis" ], "sample_host_organism_id": [], "sample_host_disease": [], "sample_host_disease_id": [], "sample_host_location": [ "Brazil: Bahia, Abrolhos Bank" ], "sample_host_location_id": [], "data_size": "1.222 MB", "sample_ph_range": { "min": null, "max": null }, "sample_temperature_range": { "min": null, "max": null }, "completeness": 100.0, "contamination": 0.0, "strain_heterogeneity": 0.0, "genome_count": 1 }, "data_type": "G", "data_source": "RefSeq", "_dfast": { "Total Sequence Length (bp)": "4438786", "Number of Sequences": "74", "Longest Sequences (bp)": "342075", "N50 (bp)": "116058", "Gap Ratio (%)": "0.000045", "GCcontent (%)": "66.3", "Number of CDSs": "4045", "Average Protein Length": "322.2", "Coding Ratio (%)": "88.1", "Number of rRNAs": "6", "Number of tRNAs": "68", "Number of CRISPRs": "3" }, "has_analysis": true, "_dfastqc": { "tc_result": [ { "organism_name": "Halomonas zincidurans", "strain": "strain=B6", "accession": "GCA_000731955.1", "taxid": 1178777, "species_taxid": 1178777, "relation_to_type": "type", "validated": true, "ani": 83.4759, "matched_fragments": 826, "total_fragments": 1449, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Halomonas smyrnensis", "strain": "strain=AAD6", "accession": "GCA_000265245.2", "taxid": 720605, "species_taxid": 720605, "relation_to_type": "type", "validated": true, "ani": 82.1808, "matched_fragments": 705, "total_fragments": 1449, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Halomonas halophila", "strain": "strain=NBRC 102604", "accession": "GCA_007989465.1", "taxid": 29573, "species_taxid": 29573, "relation_to_type": "type", "validated": true, "ani": 82.0389, "matched_fragments": 719, "total_fragments": 1449, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Halomonas denitrificans", "strain": "strain=DSM 18045", "accession": "GCA_003056305.1", "taxid": 370769, "species_taxid": 370769, "relation_to_type": "type", "validated": true, "ani": 82.0128, "matched_fragments": 698, "total_fragments": 1449, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Halomonas stenophila", "strain": "strain=CECT 7744", "accession": "GCA_014192275.1", "taxid": 795312, "species_taxid": 795312, "relation_to_type": "type", "validated": true, "ani": 81.7989, "matched_fragments": 696, "total_fragments": 1449, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Halomonas aestuarii", "strain": "strain=Hb3", "accession": "GCA_001886615.1", "taxid": 1897729, "species_taxid": 1897729, "relation_to_type": "type", "validated": true, "ani": 81.6946, "matched_fragments": 621, "total_fragments": 1449, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Halomonas ventosae", "strain": "strain=CECT 5797", "accession": "GCA_004363555.1", "taxid": 229007, "species_taxid": 229007, "relation_to_type": "type", "validated": true, "ani": 81.6301, "matched_fragments": 671, "total_fragments": 1449, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Halomonas shengliensis", "strain": "strain=CGMCC 1.6444", "accession": "GCA_900104135.1", "taxid": 419597, "species_taxid": 419597, "relation_to_type": "type", "validated": true, "ani": 81.5713, "matched_fragments": 669, "total_fragments": 1449, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Halomonas heilongjiangensis", "strain": "strain=DSM 26881", "accession": "GCA_002879645.1", "taxid": 1387883, "species_taxid": 1387883, "relation_to_type": "type", "validated": true, "ani": 81.4564, "matched_fragments": 718, "total_fragments": 1449, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Halomonas campaniensis", "strain": "strain=5AG", "accession": "GCA_014193375.1", "taxid": 213554, "species_taxid": 213554, "relation_to_type": "type", "validated": true, "ani": 81.4532, "matched_fragments": 673, "total_fragments": 1449, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Halomonas organivorans", "strain": "strain=CECT 5995", "accession": "GCA_014192055.1", "taxid": 257772, "species_taxid": 257772, "relation_to_type": "type", "validated": true, "ani": 81.4303, "matched_fragments": 770, "total_fragments": 1449, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Halomonas heilongjiangensis", "strain": "strain=9-2", "accession": "GCA_003202165.1", "taxid": 1387883, "species_taxid": 1387883, "relation_to_type": "type", "validated": true, "ani": 81.3935, "matched_fragments": 748, "total_fragments": 1449, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Halomonas lactosivorans", "strain": "strain=KCTC 52281", "accession": "GCA_003254665.1", "taxid": 2185141, "species_taxid": 2185141, "relation_to_type": "type", "validated": true, "ani": 81.3223, "matched_fragments": 705, "total_fragments": 1449, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Halomonas nitroreducens", "strain": "strain=11S", "accession": "GCA_003966155.1", "taxid": 447425, "species_taxid": 447425, "relation_to_type": "type", "validated": true, "ani": 81.3, "matched_fragments": 711, "total_fragments": 1449, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Halomonas campisalis", "strain": "strain=A4", "accession": "GCA_022341425.1", "taxid": 74661, "species_taxid": 74661, "relation_to_type": "type", "validated": true, "ani": 81.0874, "matched_fragments": 641, "total_fragments": 1449, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Halomonas ilicicola", "strain": "strain=DSM 19980", "accession": "GCA_900128925.1", "taxid": 480814, "species_taxid": 480814, "relation_to_type": "type", "validated": true, "ani": 81.0193, "matched_fragments": 669, "total_fragments": 1449, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Salinicola endophyticus", "strain": "strain=CPA92", "accession": "GCA_003206575.1", "taxid": 1949083, "species_taxid": 1949083, "relation_to_type": "type", "validated": true, "ani": 80.9422, "matched_fragments": 707, "total_fragments": 1449, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Halomonas sulfidivorans", "strain": "strain=MCCC 1A13718", "accession": "GCA_017868935.1", "taxid": 2733488, "species_taxid": 2733488, "relation_to_type": "type", "validated": true, "ani": 80.618, "matched_fragments": 622, "total_fragments": 1449, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Halomonas antri", "strain": "strain=Y3S6", "accession": "GCA_019430905.1", "taxid": 2846777, "species_taxid": 2846777, "relation_to_type": "type", "validated": true, "ani": 80.5657, "matched_fragments": 619, "total_fragments": 1449, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Halomonas tianxiuensis", "strain": "strain=BC-M4-5", "accession": "GCA_009834345.1", "taxid": 2497861, "species_taxid": 2497861, "relation_to_type": "type", "validated": true, "ani": 80.3054, "matched_fragments": 655, "total_fragments": 1449, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Halomonas alkalisoli", "strain": "strain=M5N1S17", "accession": "GCA_021412585.1", "taxid": 2907158, "species_taxid": 2907158, "relation_to_type": "type", "validated": true, "ani": 80.2944, "matched_fragments": 604, "total_fragments": 1449, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Halomonas lysinitropha", "strain": "strain=3(2)", "accession": "GCA_902500215.1", "taxid": 2607506, "species_taxid": 2607506, "relation_to_type": "type", "validated": true, "ani": 80.2593, "matched_fragments": 576, "total_fragments": 1449, "ani_threshold": 95, "status": "below_threshold" } ], "cc_result": { "completeness": 100.0, "contamination": 0.0, "strain_heterogeneity": 0.0 }, "gtdb_result": [ { "accession": "GCF_004117855.1", "gtdb_species": "s__Halomonas_C coralii", "ani": 100.0, "matched_fragments": 1445, "total_fragments": 1449, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Pseudomonadales;f__Halomonadaceae;g__Halomonas_C", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "conclusive" }, { "accession": "GCF_010993675.1", "gtdb_species": "s__Halomonas_C sp010993675", "ani": 85.9045, "matched_fragments": 892, "total_fragments": 1449, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Pseudomonadales;f__Halomonadaceae;g__Halomonas_C", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCA_001577635.1", "gtdb_species": "s__Halomonas_C sp001577635", "ani": 85.8676, "matched_fragments": 894, "total_fragments": 1449, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Pseudomonadales;f__Halomonadaceae;g__Halomonas_C", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCF_900961225.1", "gtdb_species": "s__Halomonas_C sp900961225", "ani": 83.7946, "matched_fragments": 969, "total_fragments": 1449, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Pseudomonadales;f__Halomonadaceae;g__Halomonas_C", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCF_000731955.1", "gtdb_species": "s__Halomonas_C zincidurans", "ani": 83.4643, "matched_fragments": 826, "total_fragments": 1449, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Pseudomonadales;f__Halomonadaceae;g__Halomonas_C", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCF_001886615.1", "gtdb_species": "s__Halomonas aestuarii", "ani": 81.6841, "matched_fragments": 622, "total_fragments": 1449, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Pseudomonadales;f__Halomonadaceae;g__Halomonas", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCF_003202205.1", "gtdb_species": "s__Halomonas sp003202205", "ani": 81.4423, "matched_fragments": 693, "total_fragments": 1449, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Pseudomonadales;f__Halomonadaceae;g__Halomonas", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCF_017303055.1", "gtdb_species": "s__Halomonas litopenaei_A", "ani": 78.6521, "matched_fragments": 443, "total_fragments": 1449, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Pseudomonadales;f__Halomonadaceae;g__Halomonas", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCF_001422485.1", "gtdb_species": "s__Agreia sp001422485", "ani": 74.9001, "matched_fragments": 72, "total_fragments": 1449, "gtdb_taxonomy": "d__Bacteria;p__Actinobacteriota;c__Actinomycetia;o__Actinomycetales;f__Microbacteriaceae;g__Agreia", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "96.67", "min_intra_species_ani": "96.67", "mean_intra_species_af": "0.90", "min_intra_species_af": "0.90", "num_clustered_genomes": 2, "status": "-" } ] }, "_bac2feature": { "phenotypes": null, "cell_diameter": -0.097, "cell_length": 0.397, "doubling_h": null, "growth_tmp": 31.0, "optimum_tmp": 37.0, "optimum_ph": 7.25, "genome_size": null, "gc_content": null, "coding_genes": null, "rRNA16S_genes": null, "tRNA_genes": null, "gram_stain": 0.0, "sporulation": 0.0, "motility": 1.0, "range_salinity": null, "facultative_respiration": 0.0, "anaerobic_respiration": 0.0, "aerobic_respiration": 1.0, "mesophilic_range_tmp": null, "thermophilic_range_tmp": null, "psychrophilic_range_tmp": null, "bacillus_cell_shape": 1.0, "coccus_cell_shape": 0.0, "filament_cell_shape": 0.0, "coccobacillus_cell_shape": 0.0, "vibrio_cell_shape": 0.0, "spiral_cell_shape": 0.0 }, "_genome_taxon": [ "Modicisalibacter", "coralii" ], "quality": 4, "quality_label": "\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f" }