{ "type": "genome", "identifier": "GCF_004117935.1", "organism": "Streptomyces roseicoloratus", "title": "Streptomyces roseicoloratus", "description": "na", "data type": "Genome sequencing and assembly", "organization": "Tarim University", "publication": [ {} ], "properties": { "assembly_accession": "GCF_004117935.1", "bioproject": "PRJNA224116", "biosample": "SAMN10781243", "wgs_master": "SDOY00000000.1", "refseq_category": "reference genome", "taxid": "2508722", "species_taxid": "2508722", "organism_name": "Streptomyces roseicoloratus", "infraspecific_name": "strain=TRM44457", "isolate": "na", "version_status": "latest", "assembly_level": "Scaffold", "release_type": "Major", "genome_rep": "Full", "seq_rel_date": "2019/01/29", "asm_name": "ASM411793v1", "asm_submitter": "Tarim University", "gbrs_paired_asm": "GCA_004117935.1", "paired_asm_comp": "identical", "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/004/117/935/GCF_004117935.1_ASM411793v1", "excluded_from_refseq": "na", "relation_to_type_material": "assembly from type material", "asm_not_live_date": "na ", "assembly_type": "haploid", "group": "bacteria", "genome_size": "7597003", "genome_size_ungapped": "7596453", "gc_percent": "72.500000", "replicon_count": "0", "scaffold_count": "181", "contig_count": "181", "annotation_provider": "NCBI RefSeq", "annotation_name": "GCF_004117935.1-RS_2024_05_04", "annotation_date": "2024-05-04", "total_gene_count": "6883", "protein_coding_gene_count": "6632", "non_coding_gene_count": "79", "pubmed_id": "na" }, "dbXrefs": [], "distribution": null, "Download": null, "status": "public", "visibility": null, "dateCreated": "2019-01-29", "dateModified": "2019-01-29", "datePublished": "2019-01-29", "_annotation": { "sample_count": 1, "sample_organism": [ "Streptomyces roseicoloratus" ], "sample_taxid": [ "2508722" ], "sample_host_organism": [ "cotton" ], "sample_host_organism_id": [], "sample_host_disease": [], "sample_host_disease_id": [], "sample_host_location": [ "China" ], "sample_host_location_id": [], "data_size": "2.021 MB", "sample_ph_range": { "min": null, "max": null }, "sample_temperature_range": { "min": null, "max": null }, "completeness": 100.0, "contamination": 5.21, "strain_heterogeneity": 0.0, "genome_count": 1 }, "data_type": "G", "data_source": "RefSeq", "_dfast": { "Total Sequence Length (bp)": "7597003", "Number of Sequences": "181", "Longest Sequences (bp)": "278500", "N50 (bp)": "83322", "Gap Ratio (%)": "0.007253", "GCcontent (%)": "72.6", "Number of CDSs": "6821", "Average Protein Length": "319.2", "Coding Ratio (%)": "86.0", "Number of rRNAs": "3", "Number of tRNAs": "84", "Number of CRISPRs": "1" }, "has_analysis": true, "_dfastqc": { "tc_result": [ { "organism_name": "Streptomyces roseicoloratus", "strain": "strain=TRM44457", "accession": "GCA_004117935.1", "taxid": 2508722, "species_taxid": 2508722, "relation_to_type": "type", "validated": true, "ani": 100.0, "matched_fragments": 2435, "total_fragments": 2455, 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"strain": "strain=JCM4205", "accession": "GCA_019880525.1", "taxid": 67260, "species_taxid": 67260, "relation_to_type": "type", "validated": true, "ani": 86.1663, "matched_fragments": 1568, "total_fragments": 2455, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Streptomyces cinereoruber", "strain": "strain=ATCC 19740", "accession": "GCA_009299385.1", "taxid": 67260, "species_taxid": 67260, "relation_to_type": "type", "validated": true, "ani": 86.1339, "matched_fragments": 1590, "total_fragments": 2455, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Streptomyces vietnamensis", "strain": "strain=GIM4.0001", "accession": "GCA_000830005.1", "taxid": 362257, "species_taxid": 362257, "relation_to_type": "type", "validated": true, "ani": 86.1227, "matched_fragments": 1737, "total_fragments": 2455, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Streptomyces nashvillensis", "strain": "strain=JCM 4498", "accession": "GCA_014650095.1", "taxid": 67334, "species_taxid": 67334, "relation_to_type": "type", "validated": true, "ani": 86.1157, "matched_fragments": 1714, "total_fragments": 2455, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Streptomyces hydrogenans", "strain": "strain=JCM 4771", "accession": "GCA_014656075.1", "taxid": 1873719, "species_taxid": 1873719, "relation_to_type": "type", "validated": true, "ani": 85.9184, "matched_fragments": 1605, "total_fragments": 2455, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Streptomyces hydrogenans", "strain": "strain=NBRC 13475", "accession": "GCA_020521255.1", "taxid": 1873719, "species_taxid": 1873719, "relation_to_type": "type", "validated": true, "ani": 85.9119, "matched_fragments": 1653, "total_fragments": 2455, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Streptomyces wedmorensis", "strain": "strain=NRRL 3426", "accession": "GCA_000716445.1", "taxid": 43759, 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true, "ani": 85.7955, "matched_fragments": 1720, "total_fragments": 2455, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Streptomyces filamentosus", "strain": "strain=JCM 4122", "accession": "GCA_014654895.1", "taxid": 67294, "species_taxid": 67294, "relation_to_type": "type", "validated": true, "ani": 85.7948, "matched_fragments": 1688, "total_fragments": 2455, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Streptomyces roseolus", "strain": "strain=JCM 4411", "accession": "GCA_014649855.1", "taxid": 67358, "species_taxid": 67358, "relation_to_type": "type", "validated": true, "ani": 85.7864, "matched_fragments": 1608, "total_fragments": 2455, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Streptomyces omiyaensis", "strain": "strain=JCM 4806", "accession": "GCA_014650895.1", "taxid": 68247, "species_taxid": 68247, "relation_to_type": "type", "validated": true, "ani": 85.7816, "matched_fragments": 1681, 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