{ "type": "genome", "identifier": "GCF_004120195.1", "organism": "Enterovibrio baiacu", "title": "Enterovibrio baiacu", "description": "na", "data type": "Genome sequencing and assembly", "organization": "UFRJ", "publication": [ {} ], "properties": { "assembly_accession": "GCF_004120195.1", "bioproject": "PRJNA224116", "biosample": "SAMN10744211", "wgs_master": "SCHN00000000.1", "refseq_category": "reference genome", "taxid": "2491023", "species_taxid": "2491023", "organism_name": "Enterovibrio baiacu", "infraspecific_name": "strain=A649", "isolate": "na", "version_status": "latest", "assembly_level": "Contig", "release_type": "Major", "genome_rep": "Full", "seq_rel_date": "2019/01/30", "asm_name": "ASM412019v1", "asm_submitter": "UFRJ", "gbrs_paired_asm": "GCA_004120195.1", "paired_asm_comp": "identical", "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/004/120/195/GCF_004120195.1_ASM412019v1", "excluded_from_refseq": "na", "relation_to_type_material": "assembly from type material", "asm_not_live_date": "na ", "assembly_type": "haploid", "group": "bacteria", "genome_size": "5371326", "genome_size_ungapped": "5371326", "gc_percent": "48.500000", "replicon_count": "0", "scaffold_count": "52", "contig_count": "52", "annotation_provider": "NCBI RefSeq", "annotation_name": "GCF_004120195.1-RS_2024_03_28", "annotation_date": "2024-03-28", "total_gene_count": "4795", "protein_coding_gene_count": "4610", "non_coding_gene_count": "146", "pubmed_id": "na" }, "dbXrefs": [], "distribution": null, "Download": null, "status": "public", "visibility": null, "dateCreated": "2019-01-30", "dateModified": "2019-01-30", "datePublished": "2019-01-30", "_annotation": { "sample_count": 1, "sample_organism": [ "Enterovibrio baiacu" ], "sample_taxid": [ "2491023" ], "sample_host_organism": [ "Sphoeroides spengleri" ], "sample_host_organism_id": [], "sample_host_disease": [], "sample_host_disease_id": [], "sample_host_location": [ "Brazil: Rio de Janeiro, Arraial do Cabo" ], "sample_host_location_id": [], "data_size": "1.531 MB", "sample_ph_range": { "min": null, "max": null }, "sample_temperature_range": { "min": null, "max": null }, "completeness": 100.0, "contamination": 0.0, "strain_heterogeneity": 0.0, "genome_count": 1 }, "data_type": "G", "data_source": "RefSeq", "_dfast": { "Total Sequence Length (bp)": "5371326", "Number of Sequences": "52", "Longest Sequences (bp)": "581255", "N50 (bp)": "283124", "Gap Ratio (%)": "0.000019", "GCcontent (%)": "48.4", "Number of CDSs": "4626", "Average Protein Length": "325.4", "Coding Ratio (%)": "84.1", "Number of rRNAs": "11", "Number of tRNAs": "112", "Number of CRISPRs": "1" }, "has_analysis": true, "_dfastqc": { "tc_result": [ { "organism_name": "Enterovibrio baiacu", "strain": "strain=A649", "accession": "GCA_004120195.1", "taxid": 2491023, "species_taxid": 2491023, "relation_to_type": "type", "validated": true, "ani": 100.0, "matched_fragments": 1764, "total_fragments": 1767, "ani_threshold": 95, "status": "conclusive" }, { "organism_name": "Enterovibrio baiacu", "strain": "strain=A649", "accession": "GCA_014863865.1", "taxid": 2491023, "species_taxid": 2491023, "relation_to_type": "type", "validated": true, "ani": 100.0, "matched_fragments": 1764, "total_fragments": 1767, "ani_threshold": 95, "status": "conclusive" }, { "organism_name": "Enterovibrio norvegicus", "strain": "strain=DSM 15893", "accession": "GCA_900115495.1", "taxid": 188144, "species_taxid": 188144, "relation_to_type": "type", "validated": true, "ani": 90.9527, "matched_fragments": 1493, "total_fragments": 1767, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Enterovibrio calviensis", "strain": "strain=DSM 14347", "accession": "GCA_000621165.1", "taxid": 91359, "species_taxid": 91359, "relation_to_type": "type", "validated": true, "ani": 82.382, "matched_fragments": 835, "total_fragments": 1767, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Enterovibrio nigricans", "strain": "strain=DSM 22720", "accession": "GCA_900167155.1", "taxid": 504469, "species_taxid": 504469, "relation_to_type": "type", "validated": true, "ani": 80.115, "matched_fragments": 563, "total_fragments": 1767, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Grimontia marina", "strain": "strain=CECT 8713", "accession": "GCA_900060185.1", "taxid": 646534, "species_taxid": 646534, "relation_to_type": "type", "validated": true, "ani": 80.057, "matched_fragments": 615, "total_fragments": 1767, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Grimontia celer", "strain": "strain=CECT 9029", "accession": "GCA_900055185.1", "taxid": 1796497, "species_taxid": 1796497, "relation_to_type": "type", "validated": true, "ani": 79.979, "matched_fragments": 691, "total_fragments": 1767, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Grimontia indica", "strain": "strain=AK16", "accession": "GCA_000333895.2", "taxid": 1056512, "species_taxid": 1056512, "relation_to_type": "type", "validated": true, "ani": 79.9414, "matched_fragments": 678, "total_fragments": 1767, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Grimontia sedimenti", "strain": "strain=S25", "accession": "GCA_011045095.1", "taxid": 2711294, "species_taxid": 2711294, "relation_to_type": "type", "validated": true, "ani": 79.9395, "matched_fragments": 675, "total_fragments": 1767, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Photobacterium swingsii", "strain": "strain=CECT 7576", "accession": "GCA_024346715.1", "taxid": 680026, "species_taxid": 680026, "relation_to_type": "type", "validated": true, "ani": 78.4431, "matched_fragments": 212, "total_fragments": 1767, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Photobacterium sanguinicancri", "strain": "strain=CECT 7579", "accession": "GCA_024346675.1", "taxid": 875932, "species_taxid": 875932, "relation_to_type": "type", "validated": true, "ani": 78.4198, "matched_fragments": 213, "total_fragments": 1767, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Vibrio pelagius", "strain": "strain=ATCC 25916", "accession": "GCA_024347575.1", "taxid": 28169, "species_taxid": 28169, "relation_to_type": "type", "validated": true, "ani": 78.1934, "matched_fragments": 186, "total_fragments": 1767, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Photobacterium galatheae", "strain": "strain=DSM 100496", "accession": "GCA_023653475.1", "taxid": 1654360, "species_taxid": 1654360, "relation_to_type": "type", "validated": true, "ani": 78.1575, "matched_fragments": 155, "total_fragments": 1767, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Vibrio fortis", "strain": "strain=LMG 21557", "accession": "GCA_024347475.1", "taxid": 212667, "species_taxid": 212667, "relation_to_type": "type", "validated": true, "ani": 78.1517, "matched_fragments": 193, 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"mean_intra_species_ani": "97.84", "min_intra_species_ani": "95.33", "mean_intra_species_af": "0.92", "min_intra_species_af": "0.87", "num_clustered_genomes": 14, "status": "-" }, { "accession": "GCF_000621165.1", "gtdb_species": "s__Enterovibrio calviensis", "ani": 82.3816, "matched_fragments": 836, "total_fragments": 1767, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Enterobacterales;f__Vibrionaceae;g__Enterovibrio", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCF_000286835.2", "gtdb_species": "s__Enterovibrio norvegicus_A", "ani": 80.3797, "matched_fragments": 730, "total_fragments": 1767, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Enterobacterales;f__Vibrionaceae;g__Enterovibrio", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": 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