{ "type": "genome", "identifier": "GCF_004122145.1", "organism": "Flavobacterium piscinae", "title": "Flavobacterium piscinae", "description": "na", "data type": "Genome sequencing and assembly", "organization": "National Kaohsiung University of Science and Technology", "publication": [ {} ], "properties": { "assembly_accession": "GCF_004122145.1", "bioproject": "PRJNA224116", "biosample": "SAMN10739601", "wgs_master": "SBKQ00000000.1", "refseq_category": "reference genome", "taxid": "2506424", "species_taxid": "2506424", "organism_name": "Flavobacterium piscinae", "infraspecific_name": "strain=ICH-30", "isolate": "na", "version_status": "latest", "assembly_level": "Contig", "release_type": "Major", "genome_rep": "Full", "seq_rel_date": "2019/01/30", "asm_name": "ASM412214v1", "asm_submitter": "National Kaohsiung University of Science and Technology", "gbrs_paired_asm": "GCA_004122145.1", "paired_asm_comp": "identical", "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/004/122/145/GCF_004122145.1_ASM412214v1", "excluded_from_refseq": "na", "relation_to_type_material": "assembly from type material", "asm_not_live_date": "na ", "assembly_type": "haploid", "group": "bacteria", "genome_size": "3374625", "genome_size_ungapped": "3374625", "gc_percent": "34.500000", "replicon_count": "0", "scaffold_count": "62", "contig_count": "62", "annotation_provider": "NCBI RefSeq", "annotation_name": "GCF_004122145.1-RS_2024_10_23", "annotation_date": "2024-10-23", "total_gene_count": "3025", "protein_coding_gene_count": "2946", "non_coding_gene_count": "59", "pubmed_id": "na" }, "dbXrefs": [], "distribution": null, "Download": null, "status": "public", "visibility": null, "dateCreated": "2019-01-30", "dateModified": "2019-01-30", "datePublished": "2019-01-30", "_annotation": { "sample_count": 1, "sample_organism": [ "Flavobacterium piscinae" ], "sample_taxid": [ "2506424" ], "sample_host_organism": [], "sample_host_organism_id": [], "sample_host_disease": [], "sample_host_disease_id": [], "sample_host_location": [ "Taiwan" ], "sample_host_location_id": [], "data_size": "0.940 MB", "sample_ph_range": { "min": null, "max": null }, "sample_temperature_range": { "min": null, "max": null }, "completeness": 100.0, "contamination": 0.0, "strain_heterogeneity": 0.0, "genome_count": 1 }, "data_type": "G", "data_source": "RefSeq", "_dfast": { "Total Sequence Length (bp)": "3374625", "Number of Sequences": "62", "Longest Sequences (bp)": "393722", "N50 (bp)": "207779", "Gap Ratio (%)": "0.000000", "GCcontent (%)": "34.3", "Number of CDSs": "2910", "Average Protein Length": "344.3", "Coding Ratio (%)": "89.1", "Number of rRNAs": "3", "Number of tRNAs": "46", "Number of CRISPRs": "0" }, "has_analysis": true, "_dfastqc": { "tc_result": [ { "organism_name": "Flavobacterium piscinae", "strain": "strain=ICH-30", "accession": "GCA_004122145.1", "taxid": 2506424, "species_taxid": 2506424, 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"total_fragments": 1104, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Flavobacterium macrobrachii", "strain": "strain=LMG 25203", "accession": "GCA_014385475.2", "taxid": 591204, "species_taxid": 591204, "relation_to_type": "type", "validated": true, "ani": 77.7735, "matched_fragments": 289, "total_fragments": 1104, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Flavobacterium amnicola", "strain": "strain=LLJ-11", "accession": "GCA_004122165.1", "taxid": 2506422, "species_taxid": 2506422, "relation_to_type": "type", "validated": true, "ani": 77.6641, "matched_fragments": 193, "total_fragments": 1104, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Flavobacterium dankookense", "strain": "strain=DSM 25687", "accession": "GCA_004362665.1", "taxid": 706186, "species_taxid": 706186, "relation_to_type": "type", "validated": true, "ani": 77.62, "matched_fragments": 281, "total_fragments": 1104, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Flavobacterium channae", "strain": "strain=KSM-R2A30", "accession": "GCA_021172165.1", "taxid": 2897181, "species_taxid": 2897181, "relation_to_type": "type", "validated": true, "ani": 77.4375, "matched_fragments": 238, "total_fragments": 1104, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Flavobacterium profundi", "strain": "strain=TP390", "accession": "GCA_009753805.1", "taxid": 1774945, "species_taxid": 1774945, "relation_to_type": "type", "validated": true, "ani": 77.3474, "matched_fragments": 189, "total_fragments": 1104, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Flavobacterium sediminilitoris", "strain": "strain=YSM-43", "accession": "GCA_023008245.1", "taxid": 2024526, "species_taxid": 2024526, "relation_to_type": "type", "validated": true, "ani": 77.0559, "matched_fragments": 186, "total_fragments": 1104, "ani_threshold": 95, "status": "below_threshold" }, { 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