{ "type": "genome", "identifier": "GCF_004122165.1", "organism": "Flavobacterium amnicola", "title": "Flavobacterium amnicola", "description": "na", "data type": "Genome sequencing and assembly", "organization": "National Kaohsiung University of Science and Technology", "publication": [ {} ], "properties": { "assembly_accession": "GCF_004122165.1", "bioproject": "PRJNA224116", "biosample": "SAMN10739541", "wgs_master": "SBKO00000000.1", "refseq_category": "reference genome", "taxid": "2506422", "species_taxid": "2506422", "organism_name": "Flavobacterium amnicola", "infraspecific_name": "strain=LLJ-11", "isolate": "na", "version_status": "latest", "assembly_level": "Contig", "release_type": "Major", "genome_rep": "Full", "seq_rel_date": "2019/01/30", "asm_name": "ASM412216v1", "asm_submitter": "National Kaohsiung University of Science and Technology", "gbrs_paired_asm": "GCA_004122165.1", "paired_asm_comp": "identical", "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/004/122/165/GCF_004122165.1_ASM412216v1", "excluded_from_refseq": "na", "relation_to_type_material": "assembly from type material", "asm_not_live_date": "na ", "assembly_type": "haploid", "group": "bacteria", "genome_size": "2663846", "genome_size_ungapped": "2663846", "gc_percent": "34.500000", "replicon_count": "0", "scaffold_count": "34", "contig_count": "34", "annotation_provider": "NCBI RefSeq", "annotation_name": "GCF_004122165.1-RS_2024_10_23", "annotation_date": "2024-10-23", "total_gene_count": "2461", "protein_coding_gene_count": "2395", "non_coding_gene_count": "50", "pubmed_id": "na" }, "dbXrefs": [], "distribution": null, "Download": null, "status": "public", "visibility": null, "dateCreated": "2019-01-30", "dateModified": "2019-01-30", "datePublished": "2019-01-30", "_annotation": { "sample_count": 1, "sample_organism": [ "Flavobacterium amnicola" ], "sample_taxid": [ "2506422" ], "sample_host_organism": [], "sample_host_organism_id": [], "sample_host_disease": [], "sample_host_disease_id": [], "sample_host_location": [ "Taiwan" ], "sample_host_location_id": [], "data_size": "0.745 MB", "sample_ph_range": { "min": null, "max": null }, "sample_temperature_range": { "min": null, "max": null }, "completeness": 100.0, "contamination": 0.0, "strain_heterogeneity": 0.0, "genome_count": 1 }, "data_type": "G", "data_source": "RefSeq", "_dfast": { "Total Sequence Length (bp)": "2663846", "Number of Sequences": "34", "Longest Sequences (bp)": "1251280", "N50 (bp)": "602755", "Gap Ratio (%)": "0.000000", "GCcontent (%)": "34.7", "Number of CDSs": "2380", "Average Protein Length": "340.4", "Coding Ratio (%)": "91.2", "Number of rRNAs": "3", "Number of tRNAs": "40", "Number of CRISPRs": "1" }, "has_analysis": true, "_dfastqc": { "tc_result": [ { "organism_name": "Flavobacterium amnicola", "strain": "strain=LLJ-11", "accession": "GCA_004122165.1", "taxid": 2506422, "species_taxid": 2506422, "relation_to_type": "type", "validated": true, "ani": 100.0, "matched_fragments": 878, "total_fragments": 879, "ani_threshold": 95, "status": "conclusive" }, { "organism_name": "Flavobacterium terrae", "strain": "strain=DSM 18829", "accession": "GCA_900142035.1", "taxid": 415425, "species_taxid": 415425, "relation_to_type": "type", "validated": true, "ani": 79.2061, "matched_fragments": 389, "total_fragments": 879, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Flavobacterium amniphilum", "strain": "strain=KYPY10", "accession": "GCA_023634845.1", "taxid": 1834035, "species_taxid": 1834035, "relation_to_type": "type", "validated": true, "ani": 78.7776, "matched_fragments": 346, "total_fragments": 879, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Flavobacterium proteolyticum", "strain": "strain=1Y8A", "accession": "GCA_015223105.1", "taxid": 2911683, "species_taxid": 2911683, "relation_to_type": "type", "validated": true, "ani": 78.5795, "matched_fragments": 251, "total_fragments": 879, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Flavobacterium swingsii", "strain": "strain=DSM 21789", "accession": "GCA_900111965.1", "taxid": 498292, "species_taxid": 498292, "relation_to_type": "type", "validated": true, "ani": 78.4753, "matched_fragments": 355, "total_fragments": 879, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Flavobacterium humi", "strain": "strain=DS2-A", "accession": "GCA_004745595.1", "taxid": 2562683, "species_taxid": 2562683, "relation_to_type": "type", "validated": true, "ani": 78.4076, "matched_fragments": 225, "total_fragments": 879, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Flavobacterium channae", "strain": "strain=KSM-R2A30", "accession": "GCA_021172165.1", "taxid": 2897181, "species_taxid": 2897181, "relation_to_type": "type", "validated": true, "ani": 78.3645, "matched_fragments": 255, "total_fragments": 879, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Flavobacterium limnosediminis", "strain": "strain=JC2902", "accession": "GCA_000498535.1", "taxid": 1401027, "species_taxid": 1401027, "relation_to_type": "type", "validated": true, "ani": 78.1704, "matched_fragments": 208, "total_fragments": 879, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Flavobacterium saliperosum", "strain": "strain=S13", "accession": "GCA_000498515.1", "taxid": 329186, "species_taxid": 329186, "relation_to_type": "type", "validated": true, "ani": 78.0944, "matched_fragments": 220, "total_fragments": 879, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Flavobacterium oreochromis", "strain": "strain=Costa Rica 04-02-TN", "accession": "GCA_019565455.1", "taxid": 2906078, "species_taxid": 2906078, "relation_to_type": "type", "validated": true, "ani": 78.0626, "matched_fragments": 239, "total_fragments": 879, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Flavobacterium saliperosum", "strain": "strain=CGMCC 1.3801", "accession": "GCA_900100625.1", "taxid": 329186, "species_taxid": 329186, "relation_to_type": "type", "validated": true, "ani": 78.0242, "matched_fragments": 225, "total_fragments": 879, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Flavobacterium sangjuense", "strain": "strain=GS03", "accession": "GCA_004797125.1", "taxid": 2518177, "species_taxid": 2518177, "relation_to_type": "type", "validated": true, "ani": 78.0096, "matched_fragments": 234, "total_fragments": 879, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Flavobacterium phycosphaerae", "strain": "strain=MK012", "accession": "GCA_010119235.1", "taxid": 2697515, "species_taxid": 2697515, "relation_to_type": "type", "validated": true, "ani": 77.9181, "matched_fragments": 213, "total_fragments": 879, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Flavobacterium hydatis", "strain": "strain=DSM 2063", "accession": "GCA_000737695.1", "taxid": 991, "species_taxid": 991, "relation_to_type": "type", "validated": true, "ani": 77.9006, "matched_fragments": 179, "total_fragments": 879, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Flavobacterium davisii", "strain": "strain=90-106", "accession": "GCA_019565505.1", "taxid": 2906077, "species_taxid": 2906077, "relation_to_type": "type", "validated": true, "ani": 77.8985, "matched_fragments": 256, "total_fragments": 879, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Flavobacterium enshiense", "strain": "strain=DK69", "accession": "GCA_000498495.1", "taxid": 1341165, "species_taxid": 1341165, "relation_to_type": "type", "validated": true, "ani": 77.7567, "matched_fragments": 214, "total_fragments": 879, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Flavobacterium enshiense", "strain": "strain=DK69", "accession": "GCA_000769895.1", "taxid": 1341165, "species_taxid": 1341165, "relation_to_type": "type", "validated": true, "ani": 77.6989, "matched_fragments": 210, "total_fragments": 879, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Flavobacterium lacus", "strain": "strain=CGMCC 1.12504", "accession": "GCA_003268815.1", "taxid": 1353778, "species_taxid": 1353778, "relation_to_type": "type", "validated": true, "ani": 77.6545, "matched_fragments": 194, "total_fragments": 879, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Flavobacterium piscinae", "strain": "strain=ICH-30", "accession": "GCA_004122145.1", "taxid": 2506424, "species_taxid": 2506424, "relation_to_type": "type", "validated": true, "ani": 77.5215, "matched_fragments": 195, "total_fragments": 879, "ani_threshold": 95, "status": "below_threshold" } ], "cc_result": { "completeness": 100.0, "contamination": 0.0, "strain_heterogeneity": 0.0 }, "gtdb_result": [ { "accession": 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