{ "type": "genome", "identifier": "GCF_004123805.1", "organism": "Cellulomonas endophytica", "title": "Cellulomonas endophytica", "description": "na", "data type": "Genome sequencing and assembly", "organization": "Sun Yat-Sen University", "publication": [ {} ], "properties": { "assembly_accession": "GCF_004123805.1", "bioproject": "PRJNA224116", "biosample": "SAMN10525144", "wgs_master": "RWJX00000000.1", "refseq_category": "reference genome", "taxid": "2494735", "species_taxid": "2494735", "organism_name": "Cellulomonas endophytica", "infraspecific_name": "strain=SYSUP0004", "isolate": "na", "version_status": "latest", "assembly_level": "Contig", "release_type": "Major", "genome_rep": "Full", "seq_rel_date": "2019/01/31", "asm_name": "ASM412380v1", "asm_submitter": "Sun Yat-Sen University", "gbrs_paired_asm": "GCA_004123805.1", "paired_asm_comp": "identical", "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/004/123/805/GCF_004123805.1_ASM412380v1", "excluded_from_refseq": "na", "relation_to_type_material": "assembly from type material", "asm_not_live_date": "na ", "assembly_type": "haploid", "group": "bacteria", "genome_size": "4214938", "genome_size_ungapped": "4214938", "gc_percent": "76.500000", "replicon_count": "0", "scaffold_count": "174", "contig_count": "174", "annotation_provider": "NCBI RefSeq", "annotation_name": "GCF_004123805.1-RS_2024_03_28", "annotation_date": "2024-03-28", "total_gene_count": "3750", "protein_coding_gene_count": "3605", "non_coding_gene_count": "51", "pubmed_id": "na" }, "dbXrefs": [], "distribution": null, "Download": null, "status": "public", "visibility": null, "dateCreated": "2019-01-31", "dateModified": "2019-01-31", "datePublished": "2019-01-31", "_annotation": { "sample_count": 1, "sample_organism": [ "Cellulomonas endophytica" ], "sample_taxid": [ "2494735" ], "sample_host_organism": [ "Gastrodia elata" ], "sample_host_organism_id": [], "sample_host_disease": [], "sample_host_disease_id": [], "sample_host_location": [ "China" ], "sample_host_location_id": [], "data_size": "1.085 MB", "sample_ph_range": { "min": null, "max": null }, "sample_temperature_range": { "min": null, "max": null }, "completeness": 95.83, "contamination": 0.0, "strain_heterogeneity": 0.0, "genome_count": 1 }, "data_type": "G", "data_source": "RefSeq", "_dfast": { "Total Sequence Length (bp)": "4214938", "Number of Sequences": "174", "Longest Sequences (bp)": "168502", "N50 (bp)": "57018", "Gap Ratio (%)": "0.000000", "GCcontent (%)": "76.5", "Number of CDSs": "3517", "Average Protein Length": "343.7", "Coding Ratio (%)": "86.0", "Number of rRNAs": "2", "Number of tRNAs": "61", "Number of CRISPRs": "0" }, "has_analysis": true, "_dfastqc": { "tc_result": [ { "organism_name": "Cellulomonas endophytica", "strain": "strain=SYSUP0004", "accession": "GCA_004123805.1", "taxid": 2494735, "species_taxid": 2494735, "relation_to_type": "type", "validated": true, "ani": 100.0, "matched_fragments": 1312, 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79.1394, "matched_fragments": 621, "total_fragments": 1319, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Cellulomonas hominis", "strain": "strain=DSM 9581", "accession": "GCA_014201095.1", "taxid": 156981, "species_taxid": 156981, "relation_to_type": "suspected-type", "validated": true, "ani": 79.0758, "matched_fragments": 646, "total_fragments": 1319, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Cellulomonas citrea", "strain": "strain=Ao-9", "accession": "GCA_009829685.1", "taxid": 1909423, "species_taxid": 1909423, "relation_to_type": "type", "validated": true, "ani": 78.9675, "matched_fragments": 462, "total_fragments": 1319, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Actinotalea solisilvae", "strain": "strain=KACC 19191", "accession": "GCA_016464425.1", "taxid": 2072922, "species_taxid": 2072922, "relation_to_type": "type", "validated": true, "ani": 78.6966, "matched_fragments": 651, 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