# locus_id	locus_tag	location	classification	internal_stop	indel	ref_id	description	query_cov	ref_cov	identity
MGA_9	LOCUS_00090	sequence1:10004..10273(-)	internal_stop_codon	10004..10006(-)		WP_099835063.1	IS3 family transposase	88.8	20.8	62.0
MGA_167	LOCUS_01590	sequence1:167036..167230(-)	partial			WP_011476486.1	site-specific integrase	81.2	12.3	53.8
MGA_175	LOCUS_01670	sequence1:171191..172069(+)	partial			WP_099686546.1	terminase small subunit	22.6	21.2	42.4
MGA_176	LOCUS_01680	sequence1:172256..172663(+)	frameshift		172299,172175	WP_003229917.1	PBSX family phage terminase large subunit	93.3	29.0	85.7
MGA_179	LOCUS_01710	sequence1:173437..173691(-)	frameshift,internal_stop_codon	173435..173437(-)	173668,173854	WP_013229181.1	hypothetical protein	85.7	21.5	43.1
MGA_186	LOCUS_01750	sequence1:186092..186655(-)	partial			WP_162992349.1	aromatic acid/H+ symport family MFS transporter	81.3	36.4	30.8
MGA_210	LOCUS_01990	sequence1:214256..215212(+)	partial			WP_003234919.1	NADH dehydrogenase subunit 5	100.0	63.0	85.5
MGA_227	LOCUS_02160	sequence1:231481..231984(+)	frameshift,internal_stop_codon	231982..231984(+)	231996	WP_008767815.1	phosphonopyruvate decarboxylase	98.2	44.4	36.5
MGA_228	LOCUS_02170	sequence1:231998..232558(+)	partial			WP_004530031.1	phosphonopyruvate decarboxylase	68.8	33.3	45.8
MGA_230	LOCUS_02190	sequence1:233565..234455(+)	partial			WP_004525540.1	phosphoenolpyruvate mutase	99.0	52.3	46.6
MGA_231	LOCUS_02200	sequence1:234477..235565(+)	partial			WP_011267776.1	hypothetical protein	58.8	59.2	29.9
MGA_236	LOCUS_02250	sequence1:238102..239343(+)	partial			WP_013533467.1	acetyl-CoA carboxylase biotin carboxylase subunit family protein	73.4	70.6	21.0
MGA_244	LOCUS_02330	sequence1:245023..245262(-)	frameshift,internal_stop_codon	245447..245449(-)	245290	WP_003246349.1	class D beta-lactamase	98.7	29.2	91.0
MGA_245	LOCUS_02340	sequence1:245584..245805(-)	frameshift,internal_stop_codon	245446..245448(-),245815..245817(-)	245625	WP_003246349.1	class D beta-lactamase	79.5	21.7	82.8
MGA_258	LOCUS_02470	sequence1:260101..260361(-)	partial			WP_003246321.1	AraC family transcriptional regulator	100.0	31.3	96.5
MGA_261	LOCUS_02500	sequence1:262236..264089(+)	partial			WP_010706701.1	autolysin	57.1	51.3	40.7
MGA_296	LOCUS_02850	sequence1:301229..301933(+)	partial			WP_003246325.1	EamA family transporter	99.6	74.7	82.0
MGA_394	LOCUS_03830	sequence1:401783..402193(-)	partial			WP_003246343.1	6-phospho-3-hexuloisomerase	100.0	73.5	96.3
MGA_484	LOCUS_04730	sequence1:515645..515950(+)	internal_stop_codon	515579..515581(+)		WP_003246544.1	8-oxo-dGTP diphosphatase MutT	100.0	67.8	76.2
MGA_530	LOCUS_05190	sequence1:556534..556743(+)	frameshift,internal_stop_codon	556873..556875(+)	556893,556751	WP_009966637.1	response regulator aspartate phosphatase RapI	72.5	16.1	71.4
MGA_531	LOCUS_05200	sequence1:556913..557089(+)	frameshift,internal_stop_codon	556873..556875(+)	557080,556893,557278,556751	WP_009966637.1	response regulator aspartate phosphatase RapI	96.6	14.3	87.5
MGA_562	LOCUS_05510	sequence1:586550..591277(+)	partial			WP_000815762.1	isopeptide-forming domain-containing fimbrial protein	82.4	36.2	30.9
MGA_565	LOCUS_05540	sequence1:593189..593830(+)	frameshift		593785	WP_003234223.1	PLP-dependent aminotransferase family protein	93.9	43.2	88.5
MGA_566	LOCUS_05550	sequence1:593827..594579(+)	frameshift		593788	WP_003234223.1	PLP-dependent aminotransferase family protein	100.0	54.0	91.6
MGA_591	LOCUS_05800	sequence1:616665..617222(+)	frameshift,internal_stop_codon	616504..616506(+)	616545	WP_001079707.1	5'-methylthioadenosine/adenosylhomocysteine nucleosidase	89.2	35.9	74.5
MGA_634	LOCUS_06230	sequence1:654318..654506(+)	frameshift,internal_stop_codon	654297..654299(+)	654500	WP_003244145.1	iron chaperone frataxin	100.0	50.4	83.9
MGA_635	LOCUS_06240	sequence1:654714..654887(-)	frameshift,internal_stop_codon	654714..654716(-)	654918	WP_010886425.1	GNAT family N-acetyltransferase	100.0	35.6	84.2
MGA_679	LOCUS_06670	sequence1:703926..704258(-)	frameshift		703982	WP_099835063.1	IS3 family transposase	90.9	26.3	51.0
MGA_737	LOCUS_07250	sequence1:768566..770284(-)	partial			WP_003242909.1	LXG family T7SS effector deoxyribonuclease toxin YeeF	79.0	64.6	64.9
MGA_778	LOCUS_07660	sequence1:809793..810287(-)	partial			WP_011948847.1	hypothetical protein	46.3	60.7	36.8
MGA_784	LOCUS_07720	sequence1:814509..815960(+)	partial			WP_012028097.1	excalibur calcium-binding domain-containing protein	9.9	12.4	57.4
MGA_802	LOCUS_07900	sequence1:838830..839156(-)	internal_stop_codon	838830..838832(-)		WP_000584342.1	GNAT family N-acetyltransferase	100.0	60.0	64.8
MGA_803	LOCUS_07910	sequence1:839237..839677(+)	partial			WP_010886440.1	hypothetical protein	20.5	58.8	90.0
MGA_830	LOCUS_08180	sequence1:865811..866092(+)	frameshift		866071	WP_003233692.1	DUF1992 domain-containing protein	95.7	68.5	94.4
MGA_965	LOCUS_09500	sequence1:1002368..1003303(+)	partial			WP_011029262.1	HTTM domain-containing protein	37.9	27.3	40.0
MGA_982	LOCUS_09670	sequence1:1019545..1019739(+)	frameshift		1019706	WP_003244666.1	sortase SrtA	81.2	26.3	84.6
MGA_983	LOCUS_09680	sequence1:1019768..1020142(+)	frameshift		1019706	WP_003244666.1	sortase SrtA	100.0	62.6	96.0
MGA_1002	LOCUS_09870	sequence1:1038552..1038884(+)	frameshift		1038827	WP_099835063.1	IS3 family transposase	90.9	26.3	51.0
MGA_1267	LOCUS_12520	sequence1:1299980..1300816(+)	partial			WP_010890690.1	C1 family peptidase	77.0	70.2	29.0
MGA_1268	LOCUS_12530	sequence1:1300831..1301154(+)	partial			WP_003405351.1	protease inhibitor I42 family protein	79.4	66.2	33.7
MGA_1269	LOCUS_12540	sequence1:1301278..1301622(-)	frameshift		1301575	WP_001185512.1	YukJ family protein	97.4	48.9	62.2
MGA_1270	LOCUS_12550	sequence1:1301552..1301920(-)	frameshift		1301575	WP_000172949.1	YukJ family protein	97.5	52.2	58.0
MGA_1349	LOCUS_13340	sequence1:1366603..1370907(+)	partial			WP_010886493.1	transglycosylase SLT domain-containing protein	59.8	63.1	69.7
MGA_1400	LOCUS_13850	sequence1:1414579..1415682(+)	partial			WP_010989544.1	glycosyltransferase family 2 protein	93.7	54.3	27.9
MGA_1548	LOCUS_15330	sequence1:1555948..1556100(-)	partial			WP_003232317.1	YjcZ family sporulation protein	62.0	59.6	93.5
MGA_1557	LOCUS_15420	sequence1:1565392..1565724(+)	frameshift		1565667	WP_099835063.1	IS3 family transposase	90.9	26.3	51.0
MGA_1733	LOCUS_17180	sequence1:1736431..1737015(+)	partial			WP_003245510.1	flagellar biosynthetic protein FliR	100.0	74.9	99.5
MGA_1818	LOCUS_18030	sequence1:1854747..1856381(+)	internal_stop_codon	1856379..1856381(+)		WP_003245093.1	polyketide synthase PksM	100.0	12.8	88.5
MGA_1848	LOCUS_18330	sequence1:1913775..1914512(+)	partial			WP_000027355.1	replicative DNA helicase	74.7	42.5	48.9
MGA_1849	LOCUS_18340	sequence1:1914670..1914870(+)	partial			WP_003245797.1	sigma-70 family RNA polymerase sigma factor	75.8	29.6	52.0
MGA_1850	LOCUS_18350	sequence1:1915401..1915766(+)	frameshift,internal_stop_codon	1915395..1915397(+),1915786..1915788(+)	1916013,1915742	WP_063445845.1	glycoside hydrolase family 32 protein	94.2	24.2	44.5
MGA_1851	LOCUS_18360	sequence1:1915840..1916025(+)	frameshift,internal_stop_codon	1915786..1915788(+)	1915745,1916013	WP_009896953.1	sucrose-6-phosphate hydrolase	95.1	13.4	40.9
MGA_1860	LOCUS_18450	sequence1:1924438..1924638(+)	frameshift		1924846,1924623	WP_003245860.1	SMI1/KNR4 family protein	43.9	20.1	79.3
MGA_1861	LOCUS_18460	sequence1:1924625..1924879(+)	frameshift		1924846,1924623	WP_003245860.1	SMI1/KNR4 family protein	88.1	51.4	90.5
MGA_1877	LOCUS_18620	sequence1:1942021..1942389(+)	frameshift,internal_stop_codon	1941932..1941934(+),1942019..1942021(+)	1941906,1941828	WP_011028255.1	glycoside hydrolase family 11 protein	85.2	31.3	60.0
MGA_1878	LOCUS_18630	sequence1:1942620..1942814(-)	frameshift		1942665,1942902,1942911	WP_004399048.1	endonuclease YokF	84.4	18.2	57.4
MGA_1903	LOCUS_18880	sequence1:1964558..1965010(-)	frameshift		1965030	WP_003231606.1	YndM family protein	100.0	83.2	92.7
MGA_1938	LOCUS_19230	sequence1:1991284..1992429(-)	partial			WP_001012297.1	carboxylic ester hydrolase	93.2	71.7	24.5
MGA_1953	LOCUS_19380	sequence1:2008300..2008866(-)	partial			WP_011109294.1	GNAT family N-acetyltransferase	91.5	36.9	27.8
MGA_1966	LOCUS_19510	sequence1:2055021..2055353(-)	frameshift		2055077	WP_099835063.1	IS3 family transposase	90.9	26.3	51.0
MGA_1980	LOCUS_19650	sequence1:2072023..2072562(+)	frameshift		2072520,2072773	WP_003231443.1	hypothetical protein	97.8	68.4	84.0
MGA_2030	LOCUS_20150	sequence1:2122167..2124104(+)	partial			WP_011861547.1	pyruvate, phosphate dikinase	51.3	36.2	27.6
MGA_2032	LOCUS_20170	sequence1:2126057..2126365(-)	frameshift,internal_stop_codon	2125958..2125960(-),2126123..2126125(-),2126392..2126394(-),2126030..2126032(-),2125973..2125975(-)	2126161,2126631	WP_168747920.1	UV damage repair protein UvrX	65.7	16.1	97.0
MGA_2033	LOCUS_20180	sequence1:2126548..2126784(-)	frameshift,internal_stop_codon	2126392..2126394(-)	2126631	WP_168747920.1	UV damage repair protein UvrX	82.1	16.1	82.1
MGA_2036	LOCUS_20210	sequence1:2128057..2128293(-)	partial			WP_003231326.1	type VII secretion system immunity protein YobK	85.9	74.3	38.1
MGA_2041	LOCUS_20260	sequence1:2131250..2131420(-)	partial			WP_004399108.1	N-acetylmuramoyl-L-alanine amidase BlyA	100.0	15.3	57.1
MGA_2087	LOCUS_20720	sequence1:2175781..2176017(-)	partial			WP_004399366.1	hypothetical protein	56.4	56.4	56.8
MGA_2088	LOCUS_20730	sequence1:2176145..2176399(-)	frameshift,internal_stop_codon	2176588..2176590(-)	2176189	WP_003231203.1	gluconate:H+ symporter	82.1	15.5	94.2
MGA_2089	LOCUS_20740	sequence1:2176435..2176587(-)	frameshift		2176189	WP_003231203.1	gluconate:H+ symporter	88.0	9.9	86.4
MGA_2096	LOCUS_20810	sequence1:2180739..2180894(+)	frameshift		2180882	WP_004399269.1	sodium:solute symporter	94.1	9.7	89.6
MGA_2097	LOCUS_20820	sequence1:2180993..2182225(+)	frameshift		2180882	WP_004399269.1	sodium:solute symporter	100.0	82.7	95.9
MGA_2105	LOCUS_20900	sequence1:2187269..2187640(-)	partial			WP_004399336.1	phosphatidylglycerophosphatase PgpB	100.0	60.6	88.6
MGA_2467	LOCUS_24520	sequence1:2499747..2500079(-)	frameshift		2499803	WP_099835063.1	IS3 family transposase	90.9	26.3	51.0
MGA_2498	LOCUS_24830	sequence1:2528836..2529057(-)	partial			WP_004398824.1	diacylglycerol kinase family protein	97.3	57.7	87.3
MGA_2527	LOCUS_25120	sequence1:2558078..2558509(-)	frameshift		2558095	WP_004398514.1	competence protein ComEA	97.9	68.8	78.0
MGA_2541	LOCUS_25260	sequence1:2567917..2568300(-)	frameshift,internal_stop_codon	2568303..2568305(-)	2568434,2568516	WP_003229961.1	decarboxylating 6-phosphogluconate dehydrogenase	100.0	42.8	91.3
MGA_2542	LOCUS_25270	sequence1:2568297..2568527(-)	frameshift,internal_stop_codon	2568303..2568305(-)	2568434,2568715,2568516	WP_003229961.1	decarboxylating 6-phosphogluconate dehydrogenase	71.1	14.5	59.3
MGA_2543	LOCUS_25280	sequence1:2568502..2568738(-)	frameshift,internal_stop_codon	2568303..2568305(-)	2568434,2568715,2568516	WP_003229961.1	decarboxylating 6-phosphogluconate dehydrogenase	88.5	23.2	81.2
MGA_2546	LOCUS_25310	sequence1:2570389..2570856(+)	partial			WP_000051382.1	RNA polymerase sporulation sigma factor SigK	72.9	47.7	82.3
MGA_2548	LOCUS_25330	sequence1:2572166..2572360(-)	partial			WP_010886576.1	hypothetical protein	56.2	66.7	86.1
MGA_2555	LOCUS_25400	sequence1:2577767..2578258(-)	frameshift		2577768,2578359	WP_003229881.1	multidrug efflux transcriptional regulator BltR	95.1	56.8	60.6
MGA_2563	LOCUS_25480	sequence1:2587251..2589176(+)	partial			WP_003242909.1	LXG family T7SS effector deoxyribonuclease toxin YeeF	79.7	70.1	54.6
MGA_2565	LOCUS_25500	sequence1:2589596..2589928(+)	frameshift		2589871	WP_099835063.1	IS3 family transposase	90.9	26.3	51.0
MGA_2580	LOCUS_25650	sequence1:2598937..2601306(-)	frameshift		2601389	WP_003246092.1	transglycosylase SLT domain-containing protein	100.0	49.8	95.8
MGA_2581	LOCUS_25660	sequence1:2601327..2603693(-)	frameshift		2601389	WP_003246092.1	transglycosylase SLT domain-containing protein	97.5	48.5	93.6
MGA_2608	LOCUS_25930	sequence1:2622470..2623258(-)	internal_stop_codon	2623316..2623318(-)		WP_075058863.1	ATP-binding protein	99.6	83.4	96.6
MGA_2621	LOCUS_26060	sequence1:2629446..2629826(+)	partial			WP_000051382.1	RNA polymerase sporulation sigma factor SigK	88.9	47.3	89.3
MGA_2622	LOCUS_26070	sequence1:2629960..2630079(-)	partial			WP_010886573.1	site-specific DNA recombinase SpoIVCA	82.1	6.4	90.6
MGA_2626	LOCUS_26110	sequence1:2632319..2632555(+)	partial			WP_002399578.1	DUF3850 domain-containing protein	94.9	39.1	50.0
MGA_2631	LOCUS_26160	sequence1:2636397..2636609(-)	partial			WP_003229963.1	N-acetylmuramoyl-L-alanine amidase CwlH	98.6	27.6	81.2
MGA_2632	LOCUS_26170	sequence1:2636766..2637149(-)	internal_stop_codon	2636766..2636768(-)		WP_003229946.1	N-acetylmuramoyl-L-alanine amidase CwlA	100.0	46.7	96.9
MGA_2635	LOCUS_26200	sequence1:2639268..2639396(+)	frameshift,internal_stop_codon	2639394..2639396(+)	2639495	WP_004399097.1	ImmA/IrrE family metallo-endopeptidase	100.0	24.4	95.2
MGA_2645	LOCUS_26300	sequence1:2650534..2650971(+)	frameshift		2650962	WP_003234240.1	AraC family transcriptional regulator	98.6	49.1	83.9
MGA_2646	LOCUS_26310	sequence1:2650935..2651420(+)	frameshift		2650968	WP_003234240.1	AraC family transcriptional regulator	92.5	51.2	94.0
MGA_2651	LOCUS_26360	sequence1:2654185..2654751(-)	partial			WP_011393692.1	flavin reductase family protein	61.2	71.6	26.7
MGA_2665	LOCUS_26500	sequence1:2664575..2664862(-)	partial			WP_011166936.1	HPr family phosphocarrier protein	73.7	74.2	41.4
MGA_2669	LOCUS_26540	sequence1:2666169..2666339(+)	partial			WP_002296337.1	carboxymuconolactone decarboxylase family protein	92.9	44.7	80.8
MGA_2714	LOCUS_26990	sequence1:2712701..2712859(-)	partial			WP_010886583.1	PRC-barrel domain-containing protein	100.0	29.9	98.1
MGA_2749	LOCUS_27340	sequence1:2749681..2750007(+)	partial			WP_000022545.1	DUF5412 domain-containing protein	95.4	73.0	53.8
MGA_2777	LOCUS_27620	sequence1:2773094..2773630(-)	partial			WP_010886586.1	A24 family peptidase	100.0	71.8	87.6
MGA_3041	LOCUS_30260	sequence1:3048351..3048491(+)	partial			WP_010886599.1	YtzI protein	71.7	56.9	90.9
MGA_3116	LOCUS_30980	sequence1:3130576..3130824(+)	frameshift		3130546	WP_003228886.1	biofilm formation protein MstX	100.0	74.5	96.3
MGA_3167	LOCUS_31490	sequence1:3175815..3176021(+)	frameshift,internal_stop_codon	3176019..3176021(+)	3176177	WP_003243066.1	DUF2283 domain-containing protein	100.0	52.7	82.4
MGA_3172	LOCUS_31540	sequence1:3178659..3181859(-)	partial			WP_003244105.1	type VII secretion protein EsaA	52.0	53.4	69.1
MGA_3205	LOCUS_31870	sequence1:3222287..3222523(+)	partial			WP_010886606.1	NifU family protein	83.3	58.6	100.0
MGA_3315	LOCUS_32970	sequence1:3323360..3323515(+)	partial			WP_010886612.1	YvrJ family protein	98.0	44.6	94.0
MGA_3357	LOCUS_33390	sequence1:3366449..3366874(-)	partial			WP_010905524.1	MarR family transcriptional regulator	89.4	40.5	34.9
MGA_3403	LOCUS_33840	sequence1:3412674..3413009(-)	frameshift		3413029	WP_003228297.1	ABC transporter permease	100.0	45.3	93.7
MGA_3404	LOCUS_33850	sequence1:3413006..3413410(-)	frameshift		3413029	WP_003228297.1	ABC transporter permease	94.8	51.8	95.3
MGA_3440	LOCUS_34210	sequence1:3450647..3451204(-)	partial			WP_009879854.1	hypothetical protein	74.1	79.2	44.7
MGA_3448	LOCUS_34290	sequence1:3458934..3459194(+)	partial			WP_003243674.1	sporulation hydrolase CotR	77.9	20.9	94.0
MGA_3449	LOCUS_34300	sequence1:3459178..3459420(+)	partial			WP_003243674.1	sporulation hydrolase CotR	100.0	25.0	96.2
MGA_3548	LOCUS_35290	sequence1:3560131..3560568(-)	partial			WP_003227991.1	comF operon protein ComFC	100.0	60.4	94.5
MGA_3550	LOCUS_35310	sequence1:3561182..3562300(-)	internal_stop_codon	3561182..3561184(-)		WP_003243962.1	ATP-dependent helicase ComFA	99.5	79.9	90.3
MGA_3576	LOCUS_35570	sequence1:3588161..3588862(+)	frameshift,internal_stop_codon	3588040..3588042(+)	3588168	WP_003227949.1	transcription antiterminator LytR	99.6	75.8	93.1
MGA_3579	LOCUS_35600	sequence1:3591414..3591653(-)	frameshift		3591368,3591401,3591266,3591428	WP_003227928.1	teichoic acids export ABC transporter permease subunit TagG	96.2	28.4	80.8
MGA_3582	LOCUS_35630	sequence1:3597222..3597833(+)	partial			WP_003227944.1	UTP--glucose-1-phosphate uridylyltransferase GalU	100.0	69.5	98.0
MGA_3729	LOCUS_37100	sequence1:3738327..3738851(-)	partial			WP_003243661.1	DNA-directed RNA polymerase subunit delta	60.9	61.3	95.3
MGA_3760	LOCUS_37410	sequence1:3772254..3772427(+)	frameshift,internal_stop_codon	3772501..3772503(+)	3772379,3772463	WP_003227547.1	YbaK/EbsC family protein	78.9	28.7	66.7
MGA_3761	LOCUS_37420	sequence1:3772799..3773131(+)	frameshift		3773074	WP_099835063.1	IS3 family transposase	90.9	26.3	52.0
MGA_3931	LOCUS_39120	sequence1:3945770..3946033(-)	partial			WP_003227165.1	DMT family transporter	100.0	28.0	88.5
MGA_3947	LOCUS_39280	sequence1:3966709..3967371(-)	partial			WP_010966670.1	Gfo/Idh/MocA family oxidoreductase	71.4	48.8	63.1
MGA_4008	LOCUS_39890	sequence1:4024420..4025886(+)	partial			WP_009933212.1	hypothetical protein	65.2	68.8	18.8
MGA_4023	LOCUS_40040	sequence1:4042393..4045107(-)	partial			WP_002287735.1	HsdR family type I site-specific deoxyribonuclease	27.3	23.6	37.1
MGA_4029	LOCUS_40100	sequence1:4052550..4052834(+)	internal_stop_codon	4052535..4052537(+)		WP_003243375.1	hypothetical protein	97.9	67.2	79.3
MGA_4054	LOCUS_40350	sequence1:4077933..4078076(+)	partial			WP_003242786.1	YycC family protein	68.1	69.6	100.0
MGA_4083	LOCUS_40640	sequence1:4100820..4100981(+)	partial			WP_003243894.1	DUF255 domain-containing protein	100.0	67.1	98.1
MGA_4110	LOCUS_40910	sequence1:4125006..4125140(-)	partial			WP_003178075.1	50S ribosomal protein L34	59.1	59.1	100.0