{ "type": "genome", "identifier": "GCF_004124315.2", "organism": "Bacillus cabrialesii", "title": "Bacillus cabrialesii", "description": "na", "data type": "Genome sequencing and assembly", "organization": "Instituto Tecnologico de Sonora", "publication": [ {} ], "properties": { "assembly_accession": "GCF_004124315.2", "bioproject": "PRJNA224116", "biosample": "SAMN10390288", "wgs_master": "na", "refseq_category": "reference genome", "taxid": "2487276", "species_taxid": "2487276", "organism_name": "Bacillus cabrialesii", "infraspecific_name": "strain=TE3", "isolate": "na", "version_status": "latest", "assembly_level": "Complete Genome", "release_type": "Major", "genome_rep": "Full", "seq_rel_date": "2022/05/09", "asm_name": "ASM412431v2", "asm_submitter": "Instituto Tecnologico de Sonora", "gbrs_paired_asm": "GCA_004124315.2", "paired_asm_comp": "identical", "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/004/124/315/GCF_004124315.2_ASM412431v2", "excluded_from_refseq": "na", "relation_to_type_material": "assembly from type material", "asm_not_live_date": "na ", "assembly_type": "haploid", "group": "bacteria", "genome_size": "4125766", "genome_size_ungapped": "4125766", "gc_percent": "44.000000", "replicon_count": "1", "scaffold_count": "1", "contig_count": "1", "annotation_provider": "NCBI RefSeq", "annotation_name": "NCBI Prokaryotic Genome Annotation Pipeline (PGAP)", "annotation_date": "2023-05-19", "total_gene_count": "4221", "protein_coding_gene_count": "3993", "non_coding_gene_count": "121", "pubmed_id": "31526457" }, "dbXrefs": [], "distribution": null, "Download": null, "status": "public", "visibility": null, "dateCreated": "2022-05-09", "dateModified": "2022-05-09", "datePublished": "2022-05-09", "_annotation": { "sample_count": 1, "sample_organism": [ "Bacillus cabrialesii" ], "sample_taxid": [ "2487276" ], "sample_host_organism": [ "Triticum turgidum subsp. durum" ], "sample_host_organism_id": [], "sample_host_disease": [], "sample_host_disease_id": [], "sample_host_location": [ "Mexico" ], "sample_host_location_id": [], "data_size": "1.164 MB", "sample_ph_range": { "min": null, "max": null }, "sample_temperature_range": { "min": null, "max": null }, "completeness": 100.0, "contamination": 0.0, "strain_heterogeneity": 0.0, "genome_count": 1 }, "data_type": "G", "data_source": "RefSeq", "_dfast": { "Total Sequence Length (bp)": "4125766", "Number of Sequences": "1", "Longest Sequences (bp)": "4125766", "N50 (bp)": "4125766", "Gap Ratio (%)": "0.000000", "GCcontent (%)": "44.2", "Number of CDSs": "4091", "Average Protein Length": "294.5", "Coding Ratio (%)": "87.6", "Number of rRNAs": "30", "Number of tRNAs": "86", "Number of CRISPRs": "0" }, "has_analysis": true, "_dfastqc": { "tc_result": [ { "organism_name": "Bacillus inaquosorum", "strain": "strain=KCTC 13429", "accession": "GCA_003148415.1", "taxid": 483913, "species_taxid": 483913, "relation_to_type": "type", "validated": true, "ani": 93.661, "matched_fragments": 1249, "total_fragments": 1375, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Bacillus inaquosorum", "strain": "strain=KCTC 13429", "accession": "GCA_000332645.1", "taxid": 483913, "species_taxid": 483913, "relation_to_type": "type", "validated": true, "ani": 93.6523, "matched_fragments": 1215, "total_fragments": 1375, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Bacillus spizizenii", "strain": "strain=TU-B-10", "accession": "GCA_000227465.1", "taxid": 96241, "species_taxid": 96241, "relation_to_type": "type", "validated": true, "ani": 93.5195, "matched_fragments": 1259, "total_fragments": 1375, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Bacillus spizizenii", "strain": "strain=NBRC 101239", "accession": "GCA_007989785.1", "taxid": 96241, "species_taxid": 96241, "relation_to_type": "type", "validated": true, "ani": 93.4556, "matched_fragments": 1222, "total_fragments": 1375, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Bacillus tequilensis", "strain": "strain=NCTC13306", "accession": "GCA_900445435.1", "taxid": 227866, "species_taxid": 227866, "relation_to_type": "type", "validated": true, "ani": 93.2938, "matched_fragments": 1014, "total_fragments": 1375, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Bacillus tequilensis", "strain": "strain=KCTC 13622", "accession": "GCA_000507145.1", "taxid": 227866, "species_taxid": 227866, "relation_to_type": "type", "validated": true, "ani": 93.2744, "matched_fragments": 1156, "total_fragments": 1375, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Bacillus subtilis subsp. subtilis", "strain": "strain=168", "accession": "GCA_002009135.1", "taxid": 135461, "species_taxid": 1423, "relation_to_type": "type", "validated": true, "ani": 92.2175, "matched_fragments": 1274, "total_fragments": 1375, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Bacillus subtilis subsp. subtilis", "strain": "strain=168", "accession": "GCA_002009095.1", "taxid": 135461, "species_taxid": 1423, "relation_to_type": "type", "validated": true, "ani": 92.2147, "matched_fragments": 1275, "total_fragments": 1375, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Bacillus subtilis subsp. subtilis", "strain": "strain=168", "accession": "GCA_024917115.1", "taxid": 135461, "species_taxid": 1423, "relation_to_type": "type", "validated": true, "ani": 92.2009, "matched_fragments": 1273, "total_fragments": 1375, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Bacillus vallismortis", "strain": "strain=DV1-F-3", "accession": "GCA_000245315.1", "taxid": 72361, "species_taxid": 72361, "relation_to_type": "type", "validated": true, "ani": 91.4999, "matched_fragments": 1044, "total_fragments": 1375, "ani_threshold": 95, "status": "below_threshold" } ], "cc_result": { "completeness": 100.0, "contamination": 0.0, "strain_heterogeneity": 0.0 }, "gtdb_result": [ { "accession": "GCF_004124315.1", "gtdb_species": "s__Bacillus cabrialesii", "ani": 99.97, "matched_fragments": 1343, "total_fragments": 1375, "gtdb_taxonomy": "d__Bacteria;p__Firmicutes;c__Bacilli;o__Bacillales;f__Bacillaceae;g__Bacillus", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "96.72", "min_intra_species_ani": "96.66", "mean_intra_species_af": "0.93", "min_intra_species_af": "0.91", "num_clustered_genomes": 11, "status": "conclusive" }, { "accession": "GCA_000332645.1", "gtdb_species": "s__Bacillus inaquosorum", "ani": 93.6366, "matched_fragments": 1216, "total_fragments": 1375, "gtdb_taxonomy": "d__Bacteria;p__Firmicutes;c__Bacilli;o__Bacillales;f__Bacillaceae;g__Bacillus", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "98.57", "min_intra_species_ani": "97.81", "mean_intra_species_af": "0.94", "min_intra_species_af": "0.91", "num_clustered_genomes": 20, "status": "-" }, { "accession": "GCF_000227465.1", "gtdb_species": "s__Bacillus spizizenii", "ani": 93.5138, "matched_fragments": 1260, "total_fragments": 1375, "gtdb_taxonomy": "d__Bacteria;p__Firmicutes;c__Bacilli;o__Bacillales;f__Bacillaceae;g__Bacillus", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "97.29", "min_intra_species_ani": "95.06", "mean_intra_species_af": "0.95", "min_intra_species_af": "0.89", "num_clustered_genomes": 32, "status": "-" }, { "accession": "GCF_000507145.1", "gtdb_species": "s__Bacillus tequilensis", "ani": 93.2744, "matched_fragments": 1156, "total_fragments": 1375, "gtdb_taxonomy": "d__Bacteria;p__Firmicutes;c__Bacilli;o__Bacillales;f__Bacillaceae;g__Bacillus", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "98.71", "min_intra_species_ani": "97.42", "mean_intra_species_af": "0.93", "min_intra_species_af": "0.92", "num_clustered_genomes": 4, "status": "-" }, { "accession": "GCF_002153395.1", "gtdb_species": "s__Bacillus subtilis_G", "ani": 92.289, "matched_fragments": 1211, "total_fragments": 1375, "gtdb_taxonomy": "d__Bacteria;p__Firmicutes;c__Bacilli;o__Bacillales;f__Bacillaceae;g__Bacillus", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "98.63", "min_intra_species_ani": "97.72", "mean_intra_species_af": "0.95", "min_intra_species_af": "0.93", "num_clustered_genomes": 3, "status": "-" }, { "accession": "GCF_000009045.1", "gtdb_species": "s__Bacillus subtilis", "ani": 92.2322, "matched_fragments": 1270, "total_fragments": 1375, "gtdb_taxonomy": "d__Bacteria;p__Firmicutes;c__Bacilli;o__Bacillales;f__Bacillaceae;g__Bacillus", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "98.63", "min_intra_species_ani": "95.03", "mean_intra_species_af": "0.95", "min_intra_species_af": "0.86", "num_clustered_genomes": 485, "status": "-" }, { "accession": "GCF_004116955.1", "gtdb_species": "s__Bacillus vallismortis", "ani": 91.5676, "matched_fragments": 1178, "total_fragments": 1375, "gtdb_taxonomy": "d__Bacteria;p__Firmicutes;c__Bacilli;o__Bacillales;f__Bacillaceae;g__Bacillus", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "98.90", "min_intra_species_ani": "97.68", "mean_intra_species_af": "0.96", "min_intra_species_af": "0.94", "num_clustered_genomes": 6, "status": "-" }, { "accession": "GCF_000196735.1", "gtdb_species": "s__Bacillus amyloliquefaciens", "ani": 81.2032, "matched_fragments": 684, "total_fragments": 1375, "gtdb_taxonomy": "d__Bacteria;p__Firmicutes;c__Bacilli;o__Bacillales;f__Bacillaceae;g__Bacillus", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "99.08", "min_intra_species_ani": "97.42", "mean_intra_species_af": "0.94", "min_intra_species_af": "0.89", "num_clustered_genomes": 27, "status": "-" }, { "accession": "GCF_001584325.1", "gtdb_species": "s__Bacillus nakamurai", "ani": 81.0187, "matched_fragments": 645, "total_fragments": 1375, "gtdb_taxonomy": "d__Bacteria;p__Firmicutes;c__Bacilli;o__Bacillales;f__Bacillaceae;g__Bacillus", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "99.07", "min_intra_species_ani": "99.07", "mean_intra_species_af": "0.94", "min_intra_species_af": "0.94", "num_clustered_genomes": 2, "status": "-" }, { "accession": "GCF_000981385.1", "gtdb_species": "s__Metabacillus sp000981385", "ani": 77.2064, "matched_fragments": 87, "total_fragments": 1375, "gtdb_taxonomy": "d__Bacteria;p__Firmicutes;c__Bacilli;o__Bacillales;f__Bacillaceae;g__Metabacillus", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" } ] }, "_bac2feature": { "phenotypes": null, "cell_diameter": -0.176, "cell_length": 0.387, "doubling_h": -0.134, "growth_tmp": 31.412, "optimum_tmp": 33.64, "optimum_ph": 7.746, "genome_size": 4544138.117, "gc_content": 40.577, "coding_genes": 4334.002, "rRNA16S_genes": 9.859, "tRNA_genes": 88.223, "gram_stain": 0.993, "sporulation": 0.975, "motility": 0.841, "range_salinity": 0.6, "facultative_respiration": 0.16, "anaerobic_respiration": 0.011, "aerobic_respiration": 0.827, "mesophilic_range_tmp": 0.928, "thermophilic_range_tmp": 0.053, "psychrophilic_range_tmp": 0.017, "bacillus_cell_shape": 1.0, "coccus_cell_shape": 0.0, "filament_cell_shape": 0.0, "coccobacillus_cell_shape": 0.0, "vibrio_cell_shape": 0.0, "spiral_cell_shape": 0.0 }, "_genome_taxon": [ "Bacillus", "cabrialesii" ], "quality": 5, "quality_label": "\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f" }