{ "type": "genome", "identifier": "GCF_004134805.1", "organism": "Agromyces atrinae", "title": "Agromyces atrinae", "description": "na", "data type": "Genome sequencing and assembly", "organization": "Chinese center for disease control and prevention", "publication": [ {} ], "properties": { "assembly_accession": "GCF_004134805.1", "bioproject": "PRJNA224116", "biosample": "SAMN10782596", "wgs_master": "SDPM00000000.1", "refseq_category": "na", "taxid": "592376", "species_taxid": "592376", "organism_name": "Agromyces atrinae", "infraspecific_name": "strain=DSM 23870", "isolate": "na", "version_status": "latest", "assembly_level": "Scaffold", "release_type": "Major", "genome_rep": "Full", "seq_rel_date": "2019/02/02", "asm_name": "ASM413480v1", "asm_submitter": "Chinese center for disease control and prevention", "gbrs_paired_asm": "GCA_004134805.1", "paired_asm_comp": "identical", "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/004/134/805/GCF_004134805.1_ASM413480v1", "excluded_from_refseq": "na", "relation_to_type_material": "assembly from type material", "asm_not_live_date": "na ", "assembly_type": "haploid", "group": "bacteria", "genome_size": "3856763", "genome_size_ungapped": "3856514", "gc_percent": "69.000000", "replicon_count": "0", "scaffold_count": "23", "contig_count": "23", "annotation_provider": "NCBI RefSeq", "annotation_name": "GCF_004134805.1-RS_2024_04_05", "annotation_date": "2024-04-05", "total_gene_count": "3605", "protein_coding_gene_count": "3530", "non_coding_gene_count": "53", "pubmed_id": "na" }, "dbXrefs": [], "distribution": null, "Download": null, "status": "public", "visibility": null, "dateCreated": "2019-02-02", "dateModified": "2019-02-02", "datePublished": "2019-02-02", "_annotation": { "sample_count": 1, "sample_organism": [ "Agromyces atrinae" ], "sample_taxid": [ "592376" ], "sample_host_organism": [], "sample_host_organism_id": [], "sample_host_disease": [], "sample_host_disease_id": [], "sample_host_location": [ "South Korea" ], "sample_host_location_id": [], "data_size": "1.027 MB", "sample_ph_range": { "min": null, "max": null }, "sample_temperature_range": { "min": null, "max": null }, "completeness": 100.0, "contamination": 4.17, "strain_heterogeneity": 100.0, "genome_count": 1 }, "data_type": "G", "data_source": "RefSeq", "_dfast": { "Total Sequence Length (bp)": "3856763", "Number of Sequences": "23", "Longest Sequences (bp)": "894944", "N50 (bp)": "347228", "Gap Ratio (%)": "0.006456", "GCcontent (%)": "69.1", "Number of CDSs": "3554", "Average Protein Length": "334.4", "Coding Ratio (%)": "92.4", "Number of rRNAs": "3", "Number of tRNAs": "50", "Number of CRISPRs": "0" }, "has_analysis": true, "_dfastqc": { "tc_result": [ { "organism_name": "Agromyces atrinae", "strain": "strain=DSM 23870", "accession": "GCA_004134805.1", "taxid": 592376, "species_taxid": 592376, "relation_to_type": "type", "validated": true, "ani": 100.0, "matched_fragments": 1237, "total_fragments": 1275, 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"GCA_009749375.1", "taxid": 279572, "species_taxid": 279572, "relation_to_type": "type", "validated": true, "ani": 80.645, "matched_fragments": 568, "total_fragments": 1275, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Agromyces ramosus", "strain": "strain=DSM 43045", "accession": "GCA_004216665.1", "taxid": 33879, "species_taxid": 33879, "relation_to_type": "type", "validated": true, "ani": 80.6051, "matched_fragments": 600, "total_fragments": 1275, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Agromyces mediolanus", "strain": "strain=JCM 3346", "accession": "GCA_014648575.1", "taxid": 41986, "species_taxid": 41986, "relation_to_type": "type", "validated": true, "ani": 80.5728, "matched_fragments": 609, "total_fragments": 1275, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Agromyces luteolus", "strain": "strain=JCM 11431", "accession": "GCA_009729855.1", "taxid": 88373, "species_taxid": 88373, 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