{
    "type": "genome",
    "identifier": "GCF_004134865.1",
    "organism": "Agromyces fucosus",
    "title": "Agromyces fucosus",
    "description": "na",
    "data type": "Genome sequencing and assembly",
    "organization": "Chinese center for disease control and prevention",
    "publication": [
        {}
    ],
    "properties": {
        "assembly_accession": "GCF_004134865.1",
        "bioproject": "PRJNA224116",
        "biosample": "SAMN10782607",
        "wgs_master": "SDPO00000000.1",
        "refseq_category": "reference genome",
        "taxid": "41985",
        "species_taxid": "41985",
        "organism_name": "Agromyces fucosus",
        "infraspecific_name": "strain=CCUG 35506",
        "isolate": "na",
        "version_status": "latest",
        "assembly_level": "Scaffold",
        "release_type": "Major",
        "genome_rep": "Full",
        "seq_rel_date": "2019/02/02",
        "asm_name": "ASM413486v1",
        "asm_submitter": "Chinese center for disease control and prevention",
        "gbrs_paired_asm": "GCA_004134865.1",
        "paired_asm_comp": "identical",
        "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/004/134/865/GCF_004134865.1_ASM413486v1",
        "excluded_from_refseq": "na",
        "relation_to_type_material": "assembly from type material",
        "asm_not_live_date": "na        ",
        "assembly_type": "haploid",
        "group": "bacteria",
        "genome_size": "4009498",
        "genome_size_ungapped": "4009488",
        "gc_percent": "70.000000",
        "replicon_count": "0",
        "scaffold_count": "6",
        "contig_count": "6",
        "annotation_provider": "NCBI RefSeq",
        "annotation_name": "GCF_004134865.1-RS_2024_04_17",
        "annotation_date": "2024-04-17",
        "total_gene_count": "3687",
        "protein_coding_gene_count": "3621",
        "non_coding_gene_count": "55",
        "pubmed_id": "na"
    },
    "dbXrefs": [],
    "distribution": null,
    "Download": null,
    "status": "public",
    "visibility": null,
    "dateCreated": "2019-02-02",
    "dateModified": "2019-02-02",
    "datePublished": "2019-02-02",
    "_annotation": {
        "sample_count": 1,
        "sample_organism": [
            "Agromyces fucosus"
        ],
        "sample_taxid": [
            "41985"
        ],
        "sample_host_organism": [],
        "sample_host_organism_id": [],
        "sample_host_disease": [],
        "sample_host_disease_id": [],
        "sample_host_location": [
            "not applicable"
        ],
        "sample_host_location_id": [],
        "data_size": "1.062 MB",
        "sample_ph_range": {
            "min": null,
            "max": null
        },
        "sample_temperature_range": {
            "min": null,
            "max": null
        },
        "completeness": 100.0,
        "contamination": 0.0,
        "strain_heterogeneity": 0.0,
        "genome_count": 1
    },
    "data_type": "G",
    "data_source": "RefSeq",
    "_dfast": {
        "Total Sequence Length (bp)": "4009498",
        "Number of Sequences": "6",
        "Longest Sequences (bp)": "1280208",
        "N50 (bp)": "1245478",
        "Gap Ratio (%)": "0.000249",
        "GCcontent (%)": "70.1",
        "Number of CDSs": "3649",
        "Average Protein Length": "338.9",
        "Coding Ratio (%)": "92.5",
        "Number of rRNAs": "5",
        "Number of tRNAs": "50",
        "Number of CRISPRs": "1"
    },
    "has_analysis": true,
    "_dfastqc": {
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                "accession": "GCA_004134865.1",
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                "species_taxid": 41985,
                "relation_to_type": "type",
                "validated": true,
                "ani": 100.0,
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                "ani_threshold": 95,
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            },
            {
                "organism_name": "Agromyces hippuratus",
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                "accession": "GCA_013410355.1",
                "taxid": 286438,
                "species_taxid": 286438,
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                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Agromyces cerinus subsp. cerinus",
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                "species_taxid": 33878,
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            {
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                "status": "below_threshold"
            },
            {
                "organism_name": "Agromyces laixinhei",
                "strain": "strain=HY052",
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                "ani": 86.398,
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                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Agromyces subbeticus",
                "strain": "strain=DSM 16689",
                "accession": "GCA_000421565.1",
                "taxid": 293890,
                "species_taxid": 293890,
                "relation_to_type": "type",
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                "ani": 86.2083,
                "matched_fragments": 958,
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                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Agromyces mariniharenae",
                "strain": "strain=NEAU-184",
                "accession": "GCA_008122505.1",
                "taxid": 2604423,
                "species_taxid": 2604423,
                "relation_to_type": "type",
                "validated": true,
                "ani": 83.4743,
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                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Agromyces cavernae",
                "strain": "strain=SYSU K20354",
                "accession": "GCA_021044935.1",
                "taxid": 2898659,
                "species_taxid": 2898659,
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                "validated": true,
                "ani": 83.459,
                "matched_fragments": 868,
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                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Agromyces humatus",
                "strain": "strain=JCM 14319",
                "accession": "GCA_021228295.1",
                "taxid": 279573,
                "species_taxid": 279573,
                "relation_to_type": "type",
                "validated": true,
                "ani": 83.3105,
                "matched_fragments": 822,
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                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Agromyces agglutinans",
                "strain": "strain=CFH 90414",
                "accession": "GCA_009647605.1",
                "taxid": 2662258,
                "species_taxid": 2662258,
                "relation_to_type": "type",
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                "ani": 82.4714,
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                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Agromyces flavus",
                "strain": "strain=CPCC 202695",
                "accession": "GCA_004366335.2",
                "taxid": 589382,
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                "relation_to_type": "type",
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                "ani": 82.0847,
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                "ani_threshold": 95,
                "status": "below_threshold"
            }
        ],
        "cc_result": {
            "completeness": 100.0,
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        "gtdb_result": [
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                "accession": "GCF_004134865.1",
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                "matched_fragments": 1334,
                "total_fragments": 1334,
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                "mean_intra_species_ani": "98.23",
                "min_intra_species_ani": "98.22",
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                "mean_intra_species_ani": "N/A",
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                "mean_intra_species_ani": "N/A",
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        ]
    },
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    "_genome_taxon": [
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    "quality": 5,
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}