{ "type": "genome", "identifier": "GCF_004135345.1", "organism": "Xylanimonas allomyrinae", "title": "Xylanimonas allomyrinae", "description": "na", "data type": "Genome sequencing and assembly", "organization": "National Institute of Agricultural Sciences", "publication": [ {} ], "properties": { "assembly_accession": "GCF_004135345.1", "bioproject": "PRJNA224116", "biosample": "SAMN10817575", "wgs_master": "na", "refseq_category": "reference genome", "taxid": "2509459", "species_taxid": "2509459", "organism_name": "Xylanimonas allomyrinae", "infraspecific_name": "strain=2JSPR-7", "isolate": "na", "version_status": "latest", "assembly_level": "Complete Genome", "release_type": "Major", "genome_rep": "Full", "seq_rel_date": "2019/02/03", "asm_name": "ASM413534v1", "asm_submitter": "National Institute of Agricultural Sciences", "gbrs_paired_asm": "GCA_004135345.1", "paired_asm_comp": "identical", "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/004/135/345/GCF_004135345.1_ASM413534v1", "excluded_from_refseq": "na", "relation_to_type_material": "assembly from type material", "asm_not_live_date": "na ", "assembly_type": "haploid", "group": "bacteria", "genome_size": "3848642", "genome_size_ungapped": "3848642", "gc_percent": "72.500000", "replicon_count": "2", "scaffold_count": "2", "contig_count": "2", "annotation_provider": "NCBI RefSeq", "annotation_name": "GCF_004135345.1-RS_2024_05_04", "annotation_date": "2024-05-04", "total_gene_count": "3577", "protein_coding_gene_count": "3295", "non_coding_gene_count": "62", "pubmed_id": "na" }, "dbXrefs": [], "distribution": null, "Download": null, "status": "public", "visibility": null, "dateCreated": "2019-02-03", "dateModified": "2019-02-03", "datePublished": "2019-02-03", "_annotation": { "sample_count": 1, "sample_organism": [ "Xylanimonas allomyrinae" ], "sample_taxid": [ "2509459" ], "sample_host_organism": [ "Japanese rhinoceros 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"matched_fragments": 632, "total_fragments": 1282, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Cellulosimicrobium funkei", "strain": "strain=JCM 14302", "accession": "GCA_004519295.1", "taxid": 264251, "species_taxid": 264251, "relation_to_type": "suspected-type", "validated": true, "ani": 79.6055, "matched_fragments": 634, "total_fragments": 1282, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Cellulosimicrobium funkei", "strain": "strain=NBRC 104118", "accession": "GCA_001570825.1", "taxid": 264251, "species_taxid": 264251, "relation_to_type": "suspected-type", "validated": true, "ani": 79.6043, "matched_fragments": 630, "total_fragments": 1282, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Oerskovia rustica", "strain": "strain=Sa4CUA1", "accession": "GCA_014836555.1", "taxid": 2762237, "species_taxid": 2762237, "relation_to_type": "type", "validated": true, "ani": 79.5718, "matched_fragments": 543, "total_fragments": 1282, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Cellulosimicrobium marinum", "strain": "strain=NBRC 110994", "accession": "GCA_020551945.1", "taxid": 1638992, "species_taxid": 1638992, "relation_to_type": "type", "validated": true, "ani": 79.5218, "matched_fragments": 598, "total_fragments": 1282, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Oerskovia douganii", "strain": "strain=Sa1BUA8", "accession": "GCA_015142735.1", "taxid": 2762210, "species_taxid": 2762210, "relation_to_type": "type", "validated": true, "ani": 79.4909, "matched_fragments": 548, "total_fragments": 1282, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Promicromonospora sukumoe", "strain": "strain=DSM 44121", "accession": "GCA_014137995.1", "taxid": 88382, "species_taxid": 88382, "relation_to_type": "type", "validated": true, "ani": 79.4816, "matched_fragments": 664, "total_fragments": 1282, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Oerskovia merdavium", "strain": "strain=Sa2CUA9", "accession": "GCA_014836755.1", "taxid": 2762227, "species_taxid": 2762227, "relation_to_type": "type", "validated": true, "ani": 79.4615, "matched_fragments": 532, "total_fragments": 1282, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Promicromonospora kroppenstedtii", "strain": "strain=DSM 19349", "accession": "GCA_000515355.1", "taxid": 440482, "species_taxid": 440482, "relation_to_type": "type", "validated": true, "ani": 79.4047, "matched_fragments": 577, "total_fragments": 1282, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Cellulosimicrobium arenosum", "strain": "strain=KCTC 49039", "accession": "GCA_014837295.1", "taxid": 2708133, "species_taxid": 2708133, "relation_to_type": "type", "validated": true, "ani": 79.3304, "matched_fragments": 531, "total_fragments": 1282, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Cellulomonas gilvus", "strain": "strain=ATCC 13127", "accession": "GCA_000218545.1", "taxid": 11, "species_taxid": 11, "relation_to_type": "type", "validated": true, "ani": 79.1289, "matched_fragments": 486, "total_fragments": 1282, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Cellulomonas palmilytica", "strain": "strain=EW123", "accession": "GCA_021590045.1", "taxid": 2608402, "species_taxid": 2608402, "relation_to_type": "type", "validated": true, "ani": 79.1015, "matched_fragments": 555, "total_fragments": 1282, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Promicromonospora umidemergens", "strain": "strain=DSM 22081", "accession": "GCA_024171995.1", "taxid": 629679, "species_taxid": 629679, "relation_to_type": "type", "validated": true, "ani": 78.9966, "matched_fragments": 570, "total_fragments": 1282, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Sanguibacter suarezii", "strain": 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