{
    "type": "genome",
    "identifier": "GCF_004136195.1",
    "organism": "Cutibacterium acnes DSM 1897",
    "title": "Cutibacterium acnes DSM 1897",
    "description": "na",
    "data type": "Genome sequencing and assembly",
    "organization": "University of Helsinki",
    "publication": [
        {}
    ],
    "properties": {
        "assembly_accession": "GCF_004136195.1",
        "bioproject": "PRJNA224116",
        "biosample": "SAMN08348522",
        "wgs_master": "na",
        "refseq_category": "na",
        "taxid": "1122995",
        "species_taxid": "1747",
        "organism_name": "Cutibacterium acnes DSM 1897",
        "infraspecific_name": "strain=DSM 1897",
        "isolate": "na",
        "version_status": "latest",
        "assembly_level": "Complete Genome",
        "release_type": "Major",
        "genome_rep": "Full",
        "seq_rel_date": "2019/02/04",
        "asm_name": "ASM413619v1",
        "asm_submitter": "University of Helsinki",
        "gbrs_paired_asm": "GCA_004136195.1",
        "paired_asm_comp": "identical",
        "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/004/136/195/GCF_004136195.1_ASM413619v1",
        "excluded_from_refseq": "na",
        "relation_to_type_material": "assembly from type material",
        "asm_not_live_date": "na        ",
        "assembly_type": "haploid",
        "group": "bacteria",
        "genome_size": "2495002",
        "genome_size_ungapped": "2495002",
        "gc_percent": "60.000000",
        "replicon_count": "1",
        "scaffold_count": "1",
        "contig_count": "1",
        "annotation_provider": "NCBI RefSeq",
        "annotation_name": "GCF_004136195.1-RS_2024_07_17",
        "annotation_date": "2024-07-17",
        "total_gene_count": "2445",
        "protein_coding_gene_count": "2317",
        "non_coding_gene_count": "58",
        "pubmed_id": "na"
    },
    "dbXrefs": [],
    "distribution": null,
    "Download": null,
    "status": "public",
    "visibility": null,
    "dateCreated": "2019-02-04",
    "dateModified": "2019-02-04",
    "datePublished": "2019-02-04",
    "_annotation": {
        "sample_count": 1,
        "sample_organism": [
            "Cutibacterium acnes DSM 1897"
        ],
        "sample_taxid": [
            "1122995"
        ],
        "sample_host_organism": [
            "Homo sapiens"
        ],
        "sample_host_organism_id": [],
        "sample_host_disease": [],
        "sample_host_disease_id": [],
        "sample_host_location": [
            "missing"
        ],
        "sample_host_location_id": [],
        "data_size": "0.707 MB",
        "sample_ph_range": {
            "min": null,
            "max": null
        },
        "sample_temperature_range": {
            "min": null,
            "max": null
        },
        "completeness": 100.0,
        "contamination": 0.0,
        "strain_heterogeneity": 0.0,
        "genome_count": 1
    },
    "data_type": "G",
    "data_source": "RefSeq",
    "_dfast": {
        "Total Sequence Length (bp)": "2495002",
        "Number of Sequences": "1",
        "Longest Sequences (bp)": "2495002",
        "N50 (bp)": "2495002",
        "Gap Ratio (%)": "0.000000",
        "GCcontent (%)": "60.0",
        "Number of CDSs": "2259",
        "Average Protein Length": "322.0",
        "Coding Ratio (%)": "87.5",
        "Number of rRNAs": "9",
        "Number of tRNAs": "46",
        "Number of CRISPRs": "0"
    },
    "has_analysis": true,
    "_dfastqc": {
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            {
                "organism_name": "Cutibacterium acnes",
                "strain": "strain=DSM 1897",
                "accession": "GCA_004136195.1",
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                "species_taxid": 1747,
                "relation_to_type": "type",
                "validated": true,
                "ani": 100.0,
                "matched_fragments": 828,
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                "ani_threshold": 95,
                "status": "conclusive"
            },
            {
                "organism_name": "Cutibacterium acnes",
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                "species_taxid": 1747,
                "relation_to_type": "type",
                "validated": true,
                "ani": 99.9995,
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                "total_fragments": 831,
                "ani_threshold": 95,
                "status": "conclusive"
            },
            {
                "organism_name": "Cutibacterium acnes",
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                "relation_to_type": "type",
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                "status": "conclusive"
            },
            {
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                "accession": "GCA_000472405.1",
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                "species_taxid": 1747,
                "relation_to_type": "type",
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                "ani": 99.9944,
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                "ani_threshold": 95,
                "status": "conclusive"
            },
            {
                "organism_name": "Cutibacterium acnes",
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                "accession": "GCA_000730485.1",
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                "species_taxid": 1747,
                "relation_to_type": "type",
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                "matched_fragments": 778,
                "total_fragments": 831,
                "ani_threshold": 95,
                "status": "conclusive"
            },
            {
                "organism_name": "Microlunatus antarcticus",
                "strain": "strain=DSM 11053",
                "accession": "GCA_014193425.1",
                "taxid": 53388,
                "species_taxid": 53388,
                "relation_to_type": "type",
                "validated": true,
                "ani": 76.8235,
                "matched_fragments": 55,
                "total_fragments": 831,
                "ani_threshold": 95,
                "status": "below_threshold"
            }
        ],
        "cc_result": {
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            "contamination": 0.0,
            "strain_heterogeneity": 0.0
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        "gtdb_result": [
            {
                "accession": "GCF_003030305.1",
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                "matched_fragments": 829,
                "total_fragments": 831,
                "gtdb_taxonomy": "d__Bacteria;p__Actinobacteriota;c__Actinomycetia;o__Propionibacteriales;f__Propionibacteriaceae;g__Cutibacterium",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "99.06",
                "min_intra_species_ani": "96.60",
                "mean_intra_species_af": "0.98",
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                "num_clustered_genomes": 326,
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            },
            {
                "accession": "GCF_001642025.1",
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                "gtdb_taxonomy": "d__Bacteria;p__Actinobacteriota;c__Actinomycetia;o__Propionibacteriales;f__Propionibacteriaceae;g__Cutibacterium",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "99.52",
                "min_intra_species_ani": "99.43",
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            },
            {
                "accession": "GCF_008326345.1",
                "gtdb_species": "s__Cutibacterium modestum",
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                "gtdb_taxonomy": "d__Bacteria;p__Actinobacteriota;c__Actinomycetia;o__Propionibacteriales;f__Propionibacteriaceae;g__Cutibacterium",
                "ani_circumscription_radius": 95.0,
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                "num_clustered_genomes": 9,
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            },
            {
                "accession": "GCF_009696315.1",
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                "gtdb_taxonomy": "d__Bacteria;p__Actinobacteriota;c__Actinomycetia;o__Propionibacteriales;f__Propionibacteriaceae;g__Cutibacterium",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
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            },
            {
                "accession": "GCF_000227295.1",
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            },
            {
                "accession": "GCF_001441165.1",
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                "mean_intra_species_af": "0.93",
                "min_intra_species_af": "0.89",
                "num_clustered_genomes": 8,
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            }
        ]
    },
    "_bac2feature": {
        "phenotypes": null,
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    "_genome_taxon": [
        "Cutibacterium",
        "acnes",
        "DSM",
        "1897"
    ],
    "quality": 5,
    "quality_label": "\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f"
}