{ "type": "genome", "identifier": "GCF_004136575.1", "organism": "Rothia koreensis", "title": "Rothia koreensis", "description": "na", "data type": "Genome sequencing and assembly", "organization": "Institute of Pharmacy and Molecular Biotechnology", "publication": [ {} ], "properties": { "assembly_accession": "GCF_004136575.1", "bioproject": "PRJNA224116", "biosample": "SAMN07337066", "wgs_master": "NOIQ00000000.1", "refseq_category": "reference genome", "taxid": "592378", "species_taxid": "592378", "organism_name": "Rothia koreensis", "infraspecific_name": "strain=JCM 15915", "isolate": "na", "version_status": "latest", "assembly_level": "Contig", "release_type": "Major", "genome_rep": "Full", "seq_rel_date": "2019/02/04", "asm_name": "ASM413657v1", "asm_submitter": "Institute of Pharmacy and Molecular Biotechnology", "gbrs_paired_asm": "GCA_004136575.1", "paired_asm_comp": "identical", "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/004/136/575/GCF_004136575.1_ASM413657v1", "excluded_from_refseq": "na", "relation_to_type_material": "assembly from type material", "asm_not_live_date": "na ", "assembly_type": "haploid", "group": "bacteria", "genome_size": "2911929", "genome_size_ungapped": "2911929", "gc_percent": "64.500000", "replicon_count": "0", "scaffold_count": "44", "contig_count": "44", "annotation_provider": "NCBI RefSeq", "annotation_name": "GCF_004136575.1-RS_2024_03_28", "annotation_date": "2024-03-28", "total_gene_count": "2618", "protein_coding_gene_count": "2545", "non_coding_gene_count": "54", "pubmed_id": "29169691" }, "dbXrefs": [], "distribution": null, "Download": null, "status": "public", "visibility": null, "dateCreated": "2019-02-04", "dateModified": "2019-02-04", "datePublished": "2019-02-04", "_annotation": { "sample_count": 1, "sample_organism": [ "Rothia koreensis" ], "sample_taxid": [ "592378" ], "sample_host_organism": [], "sample_host_organism_id": [], "sample_host_disease": [], "sample_host_disease_id": [], "sample_host_location": [ "South Korea" ], "sample_host_location_id": [], "data_size": "0.812 MB", "sample_ph_range": { "min": null, "max": null }, "sample_temperature_range": { "min": null, "max": null }, "completeness": 100.0, "contamination": 0.0, "strain_heterogeneity": 0.0, "genome_count": 1 }, "data_type": "G", "data_source": "RefSeq", "_dfast": { "Total Sequence Length (bp)": "2911929", "Number of Sequences": "44", "Longest Sequences (bp)": "801775", "N50 (bp)": "118248", "Gap Ratio (%)": "0.000000", "GCcontent (%)": "64.5", "Number of CDSs": "2589", "Average Protein Length": "328.6", "Coding Ratio (%)": "87.6", "Number of rRNAs": "4", "Number of tRNAs": "49", "Number of CRISPRs": "1" }, "has_analysis": true, "_dfastqc": { "tc_result": [ { "organism_name": "Rothia koreensis", "strain": "strain=JCM 15915", "accession": "GCA_004136575.1", "taxid": 592378, "species_taxid": 592378, 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