{ "type": "genome", "identifier": "GCF_004137085.1", "organism": "Lichenibacterium ramalinae", "title": "Lichenibacterium ramalinae", "description": "na", "data type": "Genome sequencing and assembly", "organization": "Research Center of Biotechnology RAS", "publication": [ {} ], "properties": { "assembly_accession": "GCF_004137085.1", "bioproject": "PRJNA224116", "biosample": "SAMN09781800", "wgs_master": "QYBC00000000.1", "refseq_category": "reference genome", "taxid": "2316527", "species_taxid": "2316527", "organism_name": "Lichenibacterium ramalinae", "infraspecific_name": "strain=RmlP001", "isolate": "na", "version_status": "latest", "assembly_level": "Scaffold", "release_type": "Major", "genome_rep": "Full", "seq_rel_date": "2019/02/04", "asm_name": "ASM413708v1", "asm_submitter": "Research Center of Biotechnology RAS", "gbrs_paired_asm": "GCA_004137085.1", "paired_asm_comp": "identical", "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/004/137/085/GCF_004137085.1_ASM413708v1", "excluded_from_refseq": "na", "relation_to_type_material": "assembly from type material", "asm_not_live_date": "na ", "assembly_type": "haploid", "group": "bacteria", "genome_size": "5801291", "genome_size_ungapped": "5800071", "gc_percent": "71.000000", "replicon_count": "0", "scaffold_count": "76", "contig_count": "76", "annotation_provider": "NCBI RefSeq", "annotation_name": "GCF_004137085.1-RS_2024_05_19", "annotation_date": "2024-05-19", "total_gene_count": "5457", "protein_coding_gene_count": "5315", "non_coding_gene_count": "57", "pubmed_id": "na" }, "dbXrefs": [], "distribution": null, "Download": null, "status": "public", "visibility": null, "dateCreated": "2019-02-04", "dateModified": "2019-02-04", "datePublished": "2019-02-04", "_annotation": { "sample_count": 1, "sample_organism": [ "Lichenibacterium ramalinae" ], "sample_taxid": [ "2316527" ], "sample_host_organism": [ "Ramalina pollinaria" ], "sample_host_organism_id": [], "sample_host_disease": [], "sample_host_disease_id": [], "sample_host_location": [ "Russia" ], "sample_host_location_id": [], "data_size": "1.562 MB", "sample_ph_range": { "min": null, "max": null }, "sample_temperature_range": { "min": null, "max": null }, "completeness": 100.0, "contamination": 0.0, "strain_heterogeneity": 0.0, "genome_count": 1 }, "data_type": "G", "data_source": "RefSeq", "_dfast": { "Total Sequence Length (bp)": "5801291", "Number of Sequences": "76", "Longest Sequences (bp)": "488411", "N50 (bp)": "216247", "Gap Ratio (%)": "0.021030", "GCcontent (%)": "70.8", "Number of CDSs": "5470", "Average Protein Length": "309.6", "Coding Ratio (%)": "87.6", "Number of rRNAs": "3", "Number of tRNAs": "59", "Number of CRISPRs": "0" }, "has_analysis": true, "_dfastqc": { "tc_result": [ { "organism_name": "Lichenibacterium ramalinae", "strain": "strain=RmlP001", "accession": "GCA_004137085.1", "taxid": 2316527, "species_taxid": 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