{ "type": "genome", "identifier": "GCF_004138325.1", "organism": "Spirosoma sordidisoli", "title": "Spirosoma sordidisoli", "description": "na", "data type": "Genome sequencing and assembly", "organization": "Nanjing Agricultural University", "publication": [ {} ], "properties": { "assembly_accession": "GCF_004138325.1", "bioproject": "PRJNA224116", "biosample": "SAMN10740148", "wgs_master": "SBLB00000000.1", "refseq_category": "reference genome", "taxid": "2502893", "species_taxid": "2502893", "organism_name": "Spirosoma sordidisoli", "infraspecific_name": "strain=TY50", "isolate": "na", "version_status": "latest", "assembly_level": "Scaffold", "release_type": "Major", "genome_rep": "Full", "seq_rel_date": "2019/02/05", "asm_name": "ASM413832v1", "asm_submitter": "Nanjing Agricultural University", "gbrs_paired_asm": "GCA_004138325.1", "paired_asm_comp": "identical", "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/004/138/325/GCF_004138325.1_ASM413832v1", "excluded_from_refseq": "na", "relation_to_type_material": "assembly from type material", "asm_not_live_date": "na ", "assembly_type": "haploid", "group": "bacteria", "genome_size": "7367609", "genome_size_ungapped": "7367599", "gc_percent": "55.500000", "replicon_count": "0", "scaffold_count": "27", "contig_count": "27", "annotation_provider": "NCBI RefSeq", "annotation_name": "GCF_004138325.1-RS_2024_10_23", "annotation_date": "2024-10-23", "total_gene_count": "6196", "protein_coding_gene_count": "6119", "non_coding_gene_count": "56", "pubmed_id": "na" }, "dbXrefs": [], "distribution": null, "Download": null, "status": "public", "visibility": null, "dateCreated": "2019-02-05", "dateModified": "2019-02-05", "datePublished": "2019-02-05", "_annotation": { "sample_count": 1, "sample_organism": [ "Spirosoma sordidisoli" ], "sample_taxid": [ "2502893" ], "sample_host_organism": [], "sample_host_organism_id": [], "sample_host_disease": [], "sample_host_disease_id": [], "sample_host_location": [ "China" ], "sample_host_location_id": [], "data_size": "2.085 MB", "sample_ph_range": { "min": null, "max": null }, "sample_temperature_range": { "min": null, "max": null }, "completeness": 100.0, "contamination": 0.0, "strain_heterogeneity": 0.0, "genome_count": 1 }, "data_type": "G", "data_source": "RefSeq", "_dfast": { "Total Sequence Length (bp)": "7367609", "Number of Sequences": "27", "Longest Sequences (bp)": "2019647", "N50 (bp)": "716721", "Gap Ratio (%)": "0.000136", "GCcontent (%)": "55.5", "Number of CDSs": "6193", "Average Protein Length": "350.3", "Coding Ratio (%)": "88.3", "Number of rRNAs": "2", "Number of tRNAs": "42", "Number of CRISPRs": "5" }, "has_analysis": true, "_dfastqc": { "tc_result": [ { "organism_name": "Spirosoma sordidisoli", "strain": "strain=TY50", "accession": "GCA_004138325.1", "taxid": 2502893, "species_taxid": 2502893, "relation_to_type": "type", "validated": true, "ani": 100.0, "matched_fragments": 2436, "total_fragments": 2444, "ani_threshold": 95, "status": "conclusive" }, { "organism_name": "Spirosoma lacussanchae", "strain": "strain=CPCC 100624", "accession": "GCA_005870035.1", "taxid": 1884249, "species_taxid": 1884249, "relation_to_type": "type", "validated": true, "ani": 93.1835, "matched_fragments": 1878, "total_fragments": 2444, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Spirosoma taeanense", "strain": "strain=TS118", "accession": "GCA_013127955.1", "taxid": 2735870, "species_taxid": 2735870, "relation_to_type": "type", "validated": true, "ani": 77.881, "matched_fragments": 564, "total_fragments": 2444, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Spirosoma rigui", "strain": "strain=KCTC 12531", "accession": "GCA_002067135.1", "taxid": 564064, "species_taxid": 564064, "relation_to_type": "type", "validated": true, "ani": 77.8454, "matched_fragments": 633, "total_fragments": 2444, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Spirosoma montaniterrae", "strain": "strain=DY10", "accession": "GCA_001988955.1", "taxid": 1178516, "species_taxid": 1178516, "relation_to_type": "type", "validated": true, "ani": 77.7101, "matched_fragments": 611, "total_fragments": 2444, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Spirosoma fluviale", "strain": "strain=DSM 29961", "accession": "GCA_900230225.1", "taxid": 1597977, "species_taxid": 1597977, "relation_to_type": "type", "validated": true, "ani": 77.6749, "matched_fragments": 551, "total_fragments": 2444, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Spirosoma utsteinense", "strain": "strain=LMG 31447", "accession": "GCA_014282275.1", "taxid": 2585773, "species_taxid": 2585773, "relation_to_type": "type", "validated": true, "ani": 77.6223, "matched_fragments": 587, "total_fragments": 2444, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Fibrisoma limi", "strain": "strain=BUZ 3", "accession": "GCA_000296815.2", "taxid": 663275, "species_taxid": 663275, "relation_to_type": "type", "validated": true, "ani": 77.2533, "matched_fragments": 507, "total_fragments": 2444, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Spirosoma agri", "strain": "strain=KCTC 52727", "accession": "GCA_010747415.1", "taxid": 1987381, "species_taxid": 1987381, "relation_to_type": "type", "validated": true, "ani": 77.1994, "matched_fragments": 431, "total_fragments": 2444, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Spirosoma aerolatum", "strain": "strain=KACC 17939", "accession": "GCA_002056795.1", "taxid": 1211326, "species_taxid": 1211326, "relation_to_type": "type", "validated": true, "ani": 77.1598, "matched_fragments": 394, "total_fragments": 2444, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Spirosoma endbachense", "strain": "strain=I-24", "accession": "GCA_010233585.1", "taxid": 2666025, "species_taxid": 2666025, "relation_to_type": "type", "validated": true, "ani": 77.0492, "matched_fragments": 387, "total_fragments": 2444, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Hymenobacter telluris", "strain": "strain=BT186", "accession": "GCA_017313265.1", "taxid": 2816474, "species_taxid": 2816474, "relation_to_type": "type", "validated": true, "ani": 75.5201, "matched_fragments": 67, "total_fragments": 2444, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Hymenobacter armeniacus", "strain": "strain=BT189", "accession": "GCA_014699055.1", "taxid": 2771358, "species_taxid": 2771358, "relation_to_type": "type", "validated": true, "ani": 75.4501, "matched_fragments": 82, "total_fragments": 2444, "ani_threshold": 95, "status": "below_threshold" } ], "cc_result": { "completeness": 100.0, "contamination": 0.0, "strain_heterogeneity": 0.0 }, "gtdb_result": [ { "accession": "GCF_004138325.1", "gtdb_species": "s__Spirosoma 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"total_fragments": 2444, "gtdb_taxonomy": "d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Cytophagales;f__Spirosomaceae;g__Spirosoma", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCF_013127955.1", "gtdb_species": "s__Spirosoma taeanense", "ani": 77.8872, "matched_fragments": 563, "total_fragments": 2444, "gtdb_taxonomy": "d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Cytophagales;f__Spirosomaceae;g__Spirosoma", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCF_002067135.1", "gtdb_species": "s__Spirosoma rigui", "ani": 77.8409, "matched_fragments": 632, "total_fragments": 2444, "gtdb_taxonomy": 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