{ "type": "genome", "identifier": "GCF_004153605.1", "organism": "Qipengyuania thermophila", "title": "Qipengyuania thermophila", "description": "na", "data type": "Genome sequencing and assembly", "organization": "Xinxiang Medical University", "publication": [ {} ], "properties": { "assembly_accession": "GCF_004153605.1", "bioproject": "PRJNA224116", "biosample": "SAMN10797289", "wgs_master": "SDSI00000000.1", "refseq_category": "reference genome", "taxid": "2509361", "species_taxid": "2509361", "organism_name": "Qipengyuania thermophila", "infraspecific_name": "strain=CFH 74456", "isolate": "na", "version_status": "latest", "assembly_level": "Scaffold", "release_type": "Major", "genome_rep": "Full", "seq_rel_date": "2019/02/11", "asm_name": "ASM415360v1", "asm_submitter": "Xinxiang Medical University", "gbrs_paired_asm": "GCA_004153605.1", "paired_asm_comp": "identical", "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/004/153/605/GCF_004153605.1_ASM415360v1", "excluded_from_refseq": "na", "relation_to_type_material": "assembly from type material", "asm_not_live_date": "na ", "assembly_type": "haploid", "group": "bacteria", "genome_size": "2261573", "genome_size_ungapped": "2261551", "gc_percent": "68.500000", "replicon_count": "0", "scaffold_count": "17", "contig_count": "17", "annotation_provider": "NCBI RefSeq", "annotation_name": "GCF_004153605.1-RS_2024_10_11", "annotation_date": "2024-10-11", "total_gene_count": "2252", "protein_coding_gene_count": "2184", "non_coding_gene_count": "51", "pubmed_id": "na" }, "dbXrefs": [], "distribution": null, "Download": null, "status": "public", "visibility": null, "dateCreated": "2019-02-11", "dateModified": "2019-02-11", "datePublished": "2019-02-11", "_annotation": { "sample_count": 1, "sample_organism": [ "Qipengyuania thermophila" ], "sample_taxid": [ "2509361" ], "sample_host_organism": [], "sample_host_organism_id": [], "sample_host_disease": [], "sample_host_disease_id": [], "sample_host_location": [ "China:Yunnan" ], "sample_host_location_id": [], "data_size": "0.617 MB", "sample_ph_range": { "min": null, "max": null }, "sample_temperature_range": { "min": null, "max": null }, "completeness": 100.0, "contamination": 0.0, "strain_heterogeneity": 0.0, "genome_count": 1 }, "data_type": "G", "data_source": "RefSeq", "_dfast": { "Total Sequence Length (bp)": "2261573", "Number of Sequences": "17", "Longest Sequences (bp)": "876265", "N50 (bp)": "853882", "Gap Ratio (%)": "0.001061", "GCcontent (%)": "68.5", "Number of CDSs": "2193", "Average Protein Length": "317.6", "Coding Ratio (%)": "92.4", "Number of rRNAs": "3", "Number of tRNAs": "46", "Number of CRISPRs": "0" }, "has_analysis": true, "_dfastqc": { "tc_result": [ { "organism_name": "Qipengyuania thermophila", "strain": "strain=CFH 74456", "accession": "GCA_004153605.1", "taxid": 2509361, "species_taxid": 2509361, "relation_to_type": "type", "validated": true, "ani": 100.0, "matched_fragments": 745, "total_fragments": 745, "ani_threshold": 95, "status": "conclusive" }, { "organism_name": "Pelagerythrobacter aerophilus", "strain": "strain=Ery1", "accession": "GCA_003581645.1", "taxid": 2306995, "species_taxid": 2306995, "relation_to_type": "type", "validated": true, "ani": 78.6629, "matched_fragments": 304, "total_fragments": 745, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Tsuneonella rigui", "strain": "strain=KCTC 42620", "accession": "GCA_003958625.1", "taxid": 1708790, "species_taxid": 1708790, "relation_to_type": "type", "validated": true, "ani": 78.5762, "matched_fragments": 300, "total_fragments": 745, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Pelagerythrobacter marinus", "strain": "strain=H32", "accession": "GCA_009827515.1", "taxid": 538382, "species_taxid": 538382, "relation_to_type": "type", "validated": true, "ani": 78.5496, "matched_fragments": 335, "total_fragments": 745, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Qipengyuania pelagi", "strain": "strain=JCM 17468", "accession": "GCA_009827295.1", "taxid": 994320, "species_taxid": 994320, "relation_to_type": "type", "validated": true, "ani": 78.4003, "matched_fragments": 290, "total_fragments": 745, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Pelagerythrobacter rhizovicinus", "strain": "strain=AY-3R", "accession": "GCA_004135625.1", "taxid": 2268576, "species_taxid": 2268576, "relation_to_type": "type", "validated": true, "ani": 78.3723, "matched_fragments": 338, "total_fragments": 745, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Pelagerythrobacter marensis", "strain": "strain=DSM 21428", "accession": "GCA_001461885.1", "taxid": 543877, "species_taxid": 543877, "relation_to_type": "type", "validated": true, "ani": 78.2309, "matched_fragments": 244, "total_fragments": 745, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Aurantiacibacter luteus", "strain": "strain=KA37", "accession": "GCA_001010945.1", "taxid": 1581420, "species_taxid": 1581420, "relation_to_type": "type", "validated": true, "ani": 78.2089, "matched_fragments": 307, "total_fragments": 745, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Aurantiacibacter arachoides", "strain": "strain=CGMCC 1.15507", "accession": "GCA_014643415.1", "taxid": 1850444, "species_taxid": 1850444, "relation_to_type": "type", "validated": true, "ani": 78.2068, "matched_fragments": 238, "total_fragments": 745, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Pelagerythrobacter marensis", "strain": "strain=KCTC 22370", "accession": "GCA_001028625.1", "taxid": 543877, "species_taxid": 543877, "relation_to_type": "type", "validated": true, "ani": 78.0872, "matched_fragments": 242, "total_fragments": 745, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Novosphingobium piscinae", "strain": "strain=KCTC 42194", "accession": "GCA_014230355.1", "taxid": 1507448, "species_taxid": 1507448, "relation_to_type": "type", "validated": true, "ani": 78.0654, "matched_fragments": 262, "total_fragments": 745, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Qipengyuania xiamenensis", "strain": "strain=1XM1-15A", "accession": "GCA_019711495.1", "taxid": 2867237, "species_taxid": 2867237, "relation_to_type": "type", "validated": true, "ani": 78.002, "matched_fragments": 236, "total_fragments": 745, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Novosphingobium aerophilum", "strain": "strain=4Y4", "accession": "GCA_014230305.1", "taxid": 2839843, "species_taxid": 2839843, "relation_to_type": "type", "validated": true, "ani": 77.9566, "matched_fragments": 277, "total_fragments": 745, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Croceibacterium ferulae", "strain": "strain=SX2RGS8", "accession": "GCA_003660445.1", "taxid": 1854641, "species_taxid": 1854641, "relation_to_type": "type", "validated": true, "ani": 77.9539, "matched_fragments": 258, "total_fragments": 745, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Qipengyuania gelatinilytica", "strain": "strain=1NDH1", "accession": "GCA_019711315.1", "taxid": 2867231, "species_taxid": 2867231, "relation_to_type": "type", "validated": true, "ani": 77.8971, "matched_fragments": 256, "total_fragments": 745, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Qipengyuania flava", "strain": "strain=DSM 16421", "accession": "GCA_011762005.1", "taxid": 192812, "species_taxid": 192812, "relation_to_type": "type", "validated": true, "ani": 77.8295, "matched_fragments": 274, "total_fragments": 745, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Novosphingobium kunmingense", "strain": "strain=CGMCC 1.12274", "accession": "GCA_002813245.1", "taxid": 1211806, "species_taxid": 1211806, "relation_to_type": "type", "validated": true, "ani": 77.8031, "matched_fragments": 273, "total_fragments": 745, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Novosphingobium arvoryzae", "strain": "strain=KCTC 32422", "accession": "GCA_014652615.1", "taxid": 1256514, "species_taxid": 1256514, "relation_to_type": "type", "validated": true, "ani": 77.6436, "matched_fragments": 242, "total_fragments": 745, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Novosphingobium flavum", "strain": "strain=NBRC 111647", "accession": "GCA_014230315.1", "taxid": 1778672, "species_taxid": 1778672, "relation_to_type": "type", "validated": true, "ani": 77.588, "matched_fragments": 253, "total_fragments": 745, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Sphingomonas ginkgonis", "strain": "strain=HMF7854", "accession": "GCA_003970925.1", "taxid": 2315330, "species_taxid": 2315330, "relation_to_type": "type", "validated": true, "ani": 77.5214, "matched_fragments": 193, "total_fragments": 745, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Croceibacterium xixiisoli", "strain": "strain=S36", "accession": "GCA_009827305.1", "taxid": 1476466, "species_taxid": 1476466, "relation_to_type": "type", "validated": true, "ani": 77.4365, "matched_fragments": 183, "total_fragments": 745, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Sphingomonas ginsengisoli An et al. 2013", "strain": "strain=KACC 16858", "accession": "GCA_009363895.1", "taxid": 363835, "species_taxid": 363835, "relation_to_type": "type", "validated": true, "ani": 77.4144, "matched_fragments": 176, "total_fragments": 745, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Sphingomonas morindae", "strain": "strain=NBD5", "accession": "GCA_023822065.1", "taxid": 1541170, "species_taxid": 1541170, "relation_to_type": "type", "validated": true, "ani": 77.149, "matched_fragments": 222, "total_fragments": 745, "ani_threshold": 95, "status": "below_threshold" } ], "cc_result": { "completeness": 100.0, "contamination": 0.0, "strain_heterogeneity": 0.0 }, "gtdb_result": [ { "accession": "GCA_004331795.1", "gtdb_species": "s__CFH-75059 sp004331795", "ani": 100.0, "matched_fragments": 745, "total_fragments": 745, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Alphaproteobacteria;o__Sphingomonadales;f__Sphingomonadaceae;g__CFH-75059", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "100.00", "min_intra_species_ani": "100.00", "mean_intra_species_af": "1.00", "min_intra_species_af": "1.00", "num_clustered_genomes": 2, "status": "conclusive" }, { "accession": "GCF_016803135.1", "gtdb_species": "s__Pelagerythrobacter sp016803135", "ani": 78.7274, "matched_fragments": 319, "total_fragments": 745, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Alphaproteobacteria;o__Sphingomonadales;f__Sphingomonadaceae;g__Pelagerythrobacter", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCF_003581645.1", "gtdb_species": "s__Pelagerythrobacter aerophilus", "ani": 78.6723, "matched_fragments": 304, "total_fragments": 745, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Alphaproteobacteria;o__Sphingomonadales;f__Sphingomonadaceae;g__Pelagerythrobacter", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCF_003958625.1", "gtdb_species": "s__Tsuneonella rigui", "ani": 78.6035, "matched_fragments": 298, "total_fragments": 745, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Alphaproteobacteria;o__Sphingomonadales;f__Sphingomonadaceae;g__Tsuneonella", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCF_009827515.1", "gtdb_species": "s__Pelagerythrobacter marinus", "ani": 78.5372, "matched_fragments": 336, "total_fragments": 745, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Alphaproteobacteria;o__Sphingomonadales;f__Sphingomonadaceae;g__Pelagerythrobacter", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCA_014359685.1", "gtdb_species": "s__Croceibacterium sp014359685", "ani": 78.4534, "matched_fragments": 219, "total_fragments": 745, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Alphaproteobacteria;o__Sphingomonadales;f__Sphingomonadaceae;g__Croceibacterium", "ani_circumscription_radius": 95.0, 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"N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCF_004135625.1", "gtdb_species": "s__Pelagerythrobacter rhizovicinus", "ani": 78.3723, "matched_fragments": 338, "total_fragments": 745, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Alphaproteobacteria;o__Sphingomonadales;f__Sphingomonadaceae;g__Pelagerythrobacter", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCF_000331285.1", "gtdb_species": "s__Erythrobacter sp000331285", "ani": 78.3555, "matched_fragments": 295, "total_fragments": 745, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Alphaproteobacteria;o__Sphingomonadales;f__Sphingomonadaceae;g__Erythrobacter", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCF_009828065.1", "gtdb_species": "s__Croceibacterium soli", "ani": 78.2714, "matched_fragments": 277, "total_fragments": 745, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Alphaproteobacteria;o__Sphingomonadales;f__Sphingomonadaceae;g__Croceibacterium", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCF_001010945.1", "gtdb_species": "s__Alteraurantiacibacter luteus", "ani": 78.2213, "matched_fragments": 306, "total_fragments": 745, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Alphaproteobacteria;o__Sphingomonadales;f__Sphingomonadaceae;g__Alteraurantiacibacter", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCF_003569745.1", "gtdb_species": "s__Croceibacterium sp003569745", "ani": 78.1696, "matched_fragments": 272, "total_fragments": 745, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Alphaproteobacteria;o__Sphingomonadales;f__Sphingomonadaceae;g__Croceibacterium", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCA_009993605.1", "gtdb_species": "s__Qipengyuania sp009993605", "ani": 78.1292, "matched_fragments": 282, "total_fragments": 745, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Alphaproteobacteria;o__Sphingomonadales;f__Sphingomonadaceae;g__Qipengyuania", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCF_014230355.1", "gtdb_species": "s__Novosphingobium piscinae", "ani": 78.0968, "matched_fragments": 259, "total_fragments": 745, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Alphaproteobacteria;o__Sphingomonadales;f__Sphingomonadaceae;g__Novosphingobium", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCF_001028625.1", "gtdb_species": "s__Pelagerythrobacter marensis", "ani": 78.0747, "matched_fragments": 243, "total_fragments": 745, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Alphaproteobacteria;o__Sphingomonadales;f__Sphingomonadaceae;g__Pelagerythrobacter", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "100.00", 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