{ "type": "genome", "identifier": "GCF_004216555.1", "organism": "Herbihabitans rhizosphaerae", "title": "Herbihabitans rhizosphaerae", "description": "na", "data type": "Genome sequencing and assembly", "organization": "DOE Joint Genome Institute", "publication": [ {} ], "properties": { "assembly_accession": "GCF_004216555.1", "bioproject": "PRJNA224116", "biosample": "SAMN10864763", "wgs_master": "SGWQ00000000.1", "refseq_category": "reference genome", "taxid": "1872711", "species_taxid": "1872711", "organism_name": "Herbihabitans rhizosphaerae", "infraspecific_name": "strain=DSM 101727", "isolate": "na", "version_status": "latest", "assembly_level": "Scaffold", "release_type": "Major", "genome_rep": "Full", "seq_rel_date": "2019/02/20", "asm_name": "ASM421655v1", "asm_submitter": "DOE Joint Genome Institute", "gbrs_paired_asm": "GCA_004216555.1", "paired_asm_comp": "identical", "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/004/216/555/GCF_004216555.1_ASM421655v1", "excluded_from_refseq": "na", "relation_to_type_material": "assembly from type material", "asm_not_live_date": "na ", "assembly_type": "haploid", "group": "bacteria", "genome_size": "6627535", "genome_size_ungapped": "6627047", "gc_percent": "69.500000", "replicon_count": "0", "scaffold_count": "25", "contig_count": "25", "annotation_provider": "NCBI RefSeq", "annotation_name": "GCF_004216555.1-RS_2024_04_10", "annotation_date": "2024-04-10", "total_gene_count": "6690", "protein_coding_gene_count": "6561", "non_coding_gene_count": "62", "pubmed_id": "na" }, "dbXrefs": [], "distribution": null, "Download": null, "status": "public", "visibility": null, "dateCreated": "2019-02-20", "dateModified": "2019-02-20", "datePublished": "2019-02-20", "_annotation": { "sample_count": 1, "sample_organism": [ "Herbihabitans rhizosphaerae" ], "sample_taxid": [ "1872711" ], "sample_host_organism": [ "not applicable" ], "sample_host_organism_id": [], "sample_host_disease": [], "sample_host_disease_id": 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"strain=DSM 44523", "accession": "GCA_900129375.1", "taxid": 2017, "species_taxid": 2017, "relation_to_type": "type", "validated": true, "ani": 78.6312, "matched_fragments": 777, "total_fragments": 2197, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Amycolatopsis anabasis", "strain": "strain=EGI 650086", "accession": "GCA_009765355.1", "taxid": 1840409, "species_taxid": 1840409, "relation_to_type": "type", "validated": true, "ani": 78.5991, "matched_fragments": 1001, "total_fragments": 2197, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Amycolatopsis suaedae", "strain": "strain=8-3EHSu", "accession": "GCA_004214935.1", "taxid": 2510978, "species_taxid": 2510978, "relation_to_type": "type", "validated": true, "ani": 78.5955, "matched_fragments": 943, "total_fragments": 2197, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Allokutzneria albata", "strain": "strain=NRRL B-24461", "accession": "GCA_000720955.1", 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78.1574, "matched_fragments": 746, "total_fragments": 2197, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Amycolatopsis camponoti", "strain": "strain=A23", "accession": "GCA_902497555.1", "taxid": 2606593, "species_taxid": 2606593, "relation_to_type": "type", "validated": true, "ani": 78.0994, "matched_fragments": 960, "total_fragments": 2197, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Crossiella equi", "strain": "strain=NRRL B-24104", "accession": "GCA_002155995.1", "taxid": 130796, "species_taxid": 130796, "relation_to_type": "type", "validated": true, "ani": 78.0446, "matched_fragments": 790, "total_fragments": 2197, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Crossiella cryophila", "strain": "strain=DSM 44230", "accession": "GCA_014204915.1", "taxid": 43355, "species_taxid": 43355, "relation_to_type": "type", "validated": true, "ani": 78.0301, "matched_fragments": 876, "total_fragments": 2197, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Amycolatopsis lurida", "strain": "strain=DSM 43134", "accession": "GCA_900105055.1", "taxid": 31959, "species_taxid": 31959, "relation_to_type": "type", "validated": true, "ani": 78.0088, "matched_fragments": 814, "total_fragments": 2197, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Crossiella equi", "strain": "strain=DSM 44580", "accession": "GCA_017876755.1", "taxid": 130796, "species_taxid": 130796, "relation_to_type": "type", "validated": true, "ani": 77.9476, "matched_fragments": 864, "total_fragments": 2197, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Pseudonocardia hydrocarbonoxydans", "strain": "strain=NBRC 14498", "accession": "GCA_006539565.1", "taxid": 76726, "species_taxid": 76726, "relation_to_type": "type", "validated": true, "ani": 77.3822, "matched_fragments": 631, "total_fragments": 2197, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Micromonospora olivasterospora", "strain": "strain=DSM 43868", "accession": "GCA_007830265.1", "taxid": 1880, "species_taxid": 1880, "relation_to_type": "type", "validated": true, "ani": 76.616, "matched_fragments": 569, "total_fragments": 2197, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Catellatospora chokoriensis", "strain": "strain=2-25(1)", "accession": "GCA_011297315.1", "taxid": 310353, "species_taxid": 310353, "relation_to_type": "type", "validated": true, "ani": 76.4959, "matched_fragments": 634, "total_fragments": 2197, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Micromonospora ferruginea", "strain": "strain=28ISP2-46", "accession": "GCA_013694245.1", "taxid": 2749844, "species_taxid": 2749844, "relation_to_type": "type", "validated": true, "ani": 76.4572, "matched_fragments": 654, "total_fragments": 2197, "ani_threshold": 95, "status": "below_threshold" } ], "cc_result": { "completeness": 100.0, 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